Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.26■■□□□ 1.79
HMGB1P09429 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGB1P09429 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
HMGB1P09429 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGB1P09429 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
HMGB1P09429 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGB1P09429 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
HMGB1P09429 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGB1P09429 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC26.25■■□□□ 1.79
HMGB1P09429 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.25■■□□□ 1.79
HMGB1P09429 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HMGB1P09429 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HMGB1P09429 ESRRAP2-201ENST00000418437 1549 ntBASIC26.24■■□□□ 1.79
HMGB1P09429 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.24■■□□□ 1.79
HMGB1P09429 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HMGB1P09429 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC26.23■■□□□ 1.79
HMGB1P09429 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HMGB1P09429 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.23■■□□□ 1.79
HMGB1P09429 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
HMGB1P09429 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.23■■□□□ 1.79
HMGB1P09429 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HMGB1P09429 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
HMGB1P09429 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HMGB1P09429 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
HMGB1P09429 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.22■■□□□ 1.79
HMGB1P09429 COMT-203ENST00000403184 2217 ntTSL 2 BASIC26.22■■□□□ 1.79
HMGB1P09429 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
HMGB1P09429 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.22■■□□□ 1.79
HMGB1P09429 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
HMGB1P09429 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGB1P09429 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGB1P09429 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGB1P09429 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGB1P09429 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGB1P09429 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
HMGB1P09429 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGB1P09429 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
HMGB1P09429 GATM-206ENST00000558336 1522 ntTSL 2 BASIC26.21■■□□□ 1.79
HMGB1P09429 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
HMGB1P09429 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGB1P09429 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGB1P09429 AL499627.2-201ENST00000606283 725 ntBASIC26.21■■□□□ 1.79
HMGB1P09429 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.21■■□□□ 1.79
HMGB1P09429 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
HMGB1P09429 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
HMGB1P09429 AC233723.2-201ENST00000623798 2106 ntBASIC26.21■■□□□ 1.79
HMGB1P09429 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.21■■□□□ 1.79
HMGB1P09429 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGB1P09429 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
HMGB1P09429 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
HMGB1P09429 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
HMGB1P09429 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
HMGB1P09429 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC26.2■■□□□ 1.79
HMGB1P09429 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC26.2■■□□□ 1.79
HMGB1P09429 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.2■■□□□ 1.79
HMGB1P09429 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC26.2■■□□□ 1.79
HMGB1P09429 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
HMGB1P09429 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.2■■□□□ 1.78
HMGB1P09429 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.2■■□□□ 1.78
HMGB1P09429 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.2■■□□□ 1.78
HMGB1P09429 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HMGB1P09429 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC26.2■■□□□ 1.78
HMGB1P09429 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
HMGB1P09429 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.19■■□□□ 1.78
HMGB1P09429 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
HMGB1P09429 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.19■■□□□ 1.78
HMGB1P09429 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.19■■□□□ 1.78
HMGB1P09429 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC26.19■■□□□ 1.78
HMGB1P09429 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.19■■□□□ 1.78
HMGB1P09429 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.19■■□□□ 1.78
HMGB1P09429 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.19■■□□□ 1.78
HMGB1P09429 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
HMGB1P09429 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
HMGB1P09429 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HMGB1P09429 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
HMGB1P09429 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.18■■□□□ 1.78
HMGB1P09429 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.18■■□□□ 1.78
HMGB1P09429 AL512631.2-201ENST00000604634 923 ntBASIC26.18■■□□□ 1.78
HMGB1P09429 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC26.18■■□□□ 1.78
HMGB1P09429 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HMGB1P09429 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HMGB1P09429 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC26.18■■□□□ 1.78
HMGB1P09429 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HMGB1P09429 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
HMGB1P09429 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HMGB1P09429 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
HMGB1P09429 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC26.17■■□□□ 1.78
HMGB1P09429 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.17■■□□□ 1.78
HMGB1P09429 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
HMGB1P09429 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.17■■□□□ 1.78
HMGB1P09429 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.17■■□□□ 1.78
HMGB1P09429 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HMGB1P09429 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms