Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
APOEP02649 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
APOEP02649 AC006455.2-201ENST00000429931 906 ntBASIC23.23■■□□□ 1.31
APOEP02649 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.23■■□□□ 1.31
APOEP02649 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
APOEP02649 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
APOEP02649 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
APOEP02649 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
APOEP02649 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
APOEP02649 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
APOEP02649 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.23■■□□□ 1.31
APOEP02649 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
APOEP02649 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
APOEP02649 AC079630.1-202ENST00000618127 1840 ntBASIC23.22■■□□□ 1.31
APOEP02649 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
APOEP02649 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.22■■□□□ 1.31
APOEP02649 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
APOEP02649 AL139246.5-201ENST00000606645 996 ntBASIC23.22■■□□□ 1.31
APOEP02649 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.22■■□□□ 1.31
APOEP02649 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
APOEP02649 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
APOEP02649 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
APOEP02649 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.21■■□□□ 1.31
APOEP02649 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
APOEP02649 AC110285.6-201ENST00000617652 491 ntBASIC23.21■■□□□ 1.31
APOEP02649 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.21■■□□□ 1.31
APOEP02649 LINC01529-204ENST00000636474 1715 ntBASIC23.21■■□□□ 1.31
APOEP02649 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
APOEP02649 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
APOEP02649 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
APOEP02649 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
APOEP02649 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
APOEP02649 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
APOEP02649 AL136162.1-201ENST00000607711 1078 ntBASIC23.2■■□□□ 1.3
APOEP02649 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.2■■□□□ 1.3
APOEP02649 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
APOEP02649 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
APOEP02649 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
APOEP02649 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
APOEP02649 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
APOEP02649 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
APOEP02649 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.19■■□□□ 1.3
APOEP02649 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
APOEP02649 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
APOEP02649 SERBP1P1-201ENST00000396021 1160 ntBASIC23.19■■□□□ 1.3
APOEP02649 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
APOEP02649 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
APOEP02649 DUX4L4-201ENST00000566884 1269 ntBASIC23.19■■□□□ 1.3
APOEP02649 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
APOEP02649 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
APOEP02649 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.18■■□□□ 1.3
APOEP02649 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.18■■□□□ 1.3
APOEP02649 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
APOEP02649 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.18■■□□□ 1.3
APOEP02649 AL138724.1-201ENST00000606771 1088 ntBASIC23.18■■□□□ 1.3
APOEP02649 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
APOEP02649 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
APOEP02649 C9orf163-202ENST00000624034 2573 ntBASIC23.18■■□□□ 1.3
APOEP02649 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
APOEP02649 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
APOEP02649 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
APOEP02649 AC135279.3-201ENST00000610945 1311 ntBASIC23.17■■□□□ 1.3
APOEP02649 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
APOEP02649 PBX2P1-201ENST00000493219 1291 ntBASIC23.17■■□□□ 1.3
APOEP02649 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.17■■□□□ 1.3
APOEP02649 pRNA.6-201ENST00000610482 90 ntBASIC23.17■■□□□ 1.3
APOEP02649 pRNA.5-201ENST00000612139 90 ntBASIC23.17■■□□□ 1.3
APOEP02649 pRNA.11-201ENST00000618423 90 ntBASIC23.17■■□□□ 1.3
APOEP02649 pRNA.13-201ENST00000619112 90 ntBASIC23.17■■□□□ 1.3
APOEP02649 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
APOEP02649 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
APOEP02649 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.17■■□□□ 1.3
APOEP02649 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
APOEP02649 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.17■■□□□ 1.3
APOEP02649 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
APOEP02649 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
APOEP02649 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
APOEP02649 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.16■■□□□ 1.3
APOEP02649 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
APOEP02649 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.16■■□□□ 1.3
APOEP02649 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.16■■□□□ 1.3
APOEP02649 MIR3181-201ENST00000578512 73 ntBASIC23.16■■□□□ 1.3
APOEP02649 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.16■■□□□ 1.3
APOEP02649 ANOS2P-203ENST00000472227 1816 ntBASIC23.16■■□□□ 1.3
APOEP02649 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
APOEP02649 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
APOEP02649 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.16■■□□□ 1.3
APOEP02649 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
APOEP02649 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
APOEP02649 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
APOEP02649 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
APOEP02649 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.15■■□□□ 1.3
APOEP02649 AC024257.2-201ENST00000549699 147 ntBASIC23.15■■□□□ 1.3
APOEP02649 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.15■■□□□ 1.3
APOEP02649 AC011298.3-201ENST00000615796 283 ntBASIC23.15■■□□□ 1.3
APOEP02649 AC106739.1-201ENST00000617035 715 ntBASIC23.15■■□□□ 1.3
APOEP02649 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.15■■□□□ 1.3
APOEP02649 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
APOEP02649 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.15■■□□□ 1.3
APOEP02649 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms