Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.82■■□□□ 1.08
SDC3O75056 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SDC3O75056 OR2I1P-207ENST00000453522 948 ntBASIC21.82■■□□□ 1.08
SDC3O75056 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.82■■□□□ 1.08
SDC3O75056 AL137784.2-201ENST00000607332 1000 ntBASIC21.82■■□□□ 1.08
SDC3O75056 AL354811.1-201ENST00000610286 706 ntBASIC21.82■■□□□ 1.08
SDC3O75056 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.82■■□□□ 1.08
SDC3O75056 RARRES2P11-201ENST00000635158 484 ntBASIC21.82■■□□□ 1.08
SDC3O75056 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SDC3O75056 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 FP325331.1-202ENST00000623531 1380 ntBASIC21.82■■□□□ 1.08
SDC3O75056 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SDC3O75056 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.82■■□□□ 1.08
SDC3O75056 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
SDC3O75056 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 AC144652.1-201ENST00000609974 1624 ntBASIC21.81■■□□□ 1.08
SDC3O75056 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.81■■□□□ 1.08
SDC3O75056 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SDC3O75056 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.81■■□□□ 1.08
SDC3O75056 AC123595.1-201ENST00000440769 1046 ntBASIC21.81■■□□□ 1.08
SDC3O75056 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.81■■□□□ 1.08
SDC3O75056 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.81■■□□□ 1.08
SDC3O75056 CCDC92B-201ENST00000575506 885 ntBASIC21.81■■□□□ 1.08
SDC3O75056 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.81■■□□□ 1.08
SDC3O75056 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SDC3O75056 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SDC3O75056 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.81■■□□□ 1.08
SDC3O75056 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
SDC3O75056 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SDC3O75056 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SDC3O75056 LINC01529-204ENST00000636474 1715 ntBASIC21.8■■□□□ 1.08
SDC3O75056 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SDC3O75056 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.8■■□□□ 1.08
SDC3O75056 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SDC3O75056 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SDC3O75056 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
SDC3O75056 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SDC3O75056 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.8■■□□□ 1.08
SDC3O75056 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.8■■□□□ 1.08
SDC3O75056 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.8■■□□□ 1.08
SDC3O75056 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SDC3O75056 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.8■■□□□ 1.08
SDC3O75056 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.8■■□□□ 1.08
SDC3O75056 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SDC3O75056 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
SDC3O75056 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.79■■□□□ 1.08
SDC3O75056 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.79■■□□□ 1.08
SDC3O75056 AC092437.1-201ENST00000624794 1048 ntBASIC21.79■■□□□ 1.08
SDC3O75056 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SDC3O75056 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.79■■□□□ 1.08
SDC3O75056 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SDC3O75056 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
SDC3O75056 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SDC3O75056 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SDC3O75056 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.78■■□□□ 1.08
SDC3O75056 AC020928.2-201ENST00000588717 2197 ntBASIC21.78■■□□□ 1.08
SDC3O75056 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SDC3O75056 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.78■■□□□ 1.08
SDC3O75056 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SDC3O75056 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SDC3O75056 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.78■■□□□ 1.08
SDC3O75056 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.78■■□□□ 1.08
SDC3O75056 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SDC3O75056 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SDC3O75056 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.77■■□□□ 1.08
SDC3O75056 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.77■■□□□ 1.08
SDC3O75056 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.77■■□□□ 1.08
SDC3O75056 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.77■■□□□ 1.08
SDC3O75056 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
SDC3O75056 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SDC3O75056 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SDC3O75056 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms