Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HMGB3O15347 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGB3O15347 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HMGB3O15347 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB3O15347 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HMGB3O15347 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB3O15347 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB3O15347 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGB3O15347 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HMGB3O15347 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HMGB3O15347 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB3O15347 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB3O15347 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB3O15347 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB3O15347 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
HMGB3O15347 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 AIRN-201ENST00000601203 4374 ntBASIC17.86■□□□□ 0.45
HMGB3O15347 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HMGB3O15347 AL157400.5-201ENST00000507624 621 ntBASIC17.86■□□□□ 0.45
HMGB3O15347 AC025884.2-201ENST00000553429 711 ntBASIC17.86■□□□□ 0.45
HMGB3O15347 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
HMGB3O15347 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGB3O15347 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB3O15347 NFIC-211ENST00000641145 8399 ntBASIC17.85■□□□□ 0.45
HMGB3O15347 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGB3O15347 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB3O15347 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB3O15347 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB3O15347 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGB3O15347 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB3O15347 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB3O15347 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
HMGB3O15347 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB3O15347 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB3O15347 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
HMGB3O15347 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.84■□□□□ 0.45
HMGB3O15347 MOB2-207ENST00000614710 705 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB3O15347 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB3O15347 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB3O15347 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB3O15347 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB3O15347 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HMGB3O15347 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB3O15347 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGB3O15347 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGB3O15347 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
HMGB3O15347 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB3O15347 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB3O15347 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGB3O15347 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGB3O15347 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB3O15347 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB3O15347 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB3O15347 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB3O15347 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
HMGB3O15347 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGB3O15347 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGB3O15347 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB3O15347 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms