Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
SMIM28A0A1B0GU29 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMIM28A0A1B0GU29 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
SMIM28A0A1B0GU29 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMIM28A0A1B0GU29 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
SMIM28A0A1B0GU29 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 IRS3P-201ENST00000223076 1006 ntBASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMIM28A0A1B0GU29 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
SMIM28A0A1B0GU29 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
SMIM28A0A1B0GU29 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
SMIM28A0A1B0GU29 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 RARRES2P6-201ENST00000567333 442 ntBASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.96■■□□□ 1.43
SMIM28A0A1B0GU29 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.43
SMIM28A0A1B0GU29 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SMIM28A0A1B0GU29 AC026271.2-201ENST00000428091 497 ntBASIC23.95■■□□□ 1.42
SMIM28A0A1B0GU29 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMIM28A0A1B0GU29 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 TSPY26P-201ENST00000476365 1326 ntBASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.94■■□□□ 1.42
SMIM28A0A1B0GU29 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 ANOS2P-203ENST00000472227 1816 ntBASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMIM28A0A1B0GU29 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 AC004687.1-201ENST00000579003 1625 ntBASIC23.92■■□□□ 1.42
SMIM28A0A1B0GU29 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
SMIM28A0A1B0GU29 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SMIM28A0A1B0GU29 IGHV3-19-201ENST00000521488 291 ntBASIC23.91■■□□□ 1.42
SMIM28A0A1B0GU29 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.91■■□□□ 1.42
SMIM28A0A1B0GU29 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SMIM28A0A1B0GU29 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.91■■□□□ 1.42
SMIM28A0A1B0GU29 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 AC093323.1-202ENST00000635031 2045 ntBASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
SMIM28A0A1B0GU29 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SMIM28A0A1B0GU29 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
SMIM28A0A1B0GU29 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SMIM28A0A1B0GU29 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SMIM28A0A1B0GU29 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.89■■□□□ 1.42
SMIM28A0A1B0GU29 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SMIM28A0A1B0GU29 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms