Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 CTNS-201ENST00000046640 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 GRIA4-202ENST00000393125 2994 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
AMBRA1Q9C0C7 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 WIPF3-201ENST00000242140 4184 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 DPYSL2-206ENST00000523027 2130 ntTSL 2 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 ABCB9-211ENST00000540285 3330 ntTSL 2 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
AMBRA1Q9C0C7 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AL662890.1-201ENST00000396818 632 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 MPRIPP1-201ENST00000452433 1089 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AC026740.1-201ENST00000607068 791 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AL021707.6-201ENST00000609212 491 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AL021578.1-201ENST00000613646 709 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 TUBBP5-203ENST00000508529 1334 ntBASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 ZBTB26-201ENST00000373654 2047 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 ATG7-213ENST00000446450 2042 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 TRO-202ENST00000319167 2326 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 TRO-203ENST00000375022 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 ZNF287-201ENST00000395824 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
AMBRA1Q9C0C7 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 SUCO-209ENST00000610051 2925 ntTSL 2 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 ATG10-201ENST00000282185 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 SPHK2-208ENST00000599029 3085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 DLGAP2-201ENST00000421627 3165 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 AC005722.1-201ENST00000431878 964 ntBASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.76□□□□□ -0.37
AMBRA1Q9C0C7 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 161 ms