Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC019294.1-202ENST00000566174 2071 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL6A3P12111 SPAG8-201ENST00000340291 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 ZNF493-208ENST00000599461 1769 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 SETDB1-203ENST00000368963 1045 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 LINC01241-201ENST00000423326 1237 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 RPLP1P13-201ENST00000434567 299 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 PSMD6-209ENST00000482510 1176 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 PA2G4-206ENST00000552766 1085 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 METTL23-211ENST00000589977 617 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A3P12111 AP002986.1-203ENST00000602310 330 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A3P12111 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 AL118508.1-201ENST00000613502 2345 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 FAM156A-203ENST00000611661 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 TRPC3-205ENST00000513531 2382 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 SMUG1-AS1-201ENST00000634796 1734 ntTSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 UBE2A-201ENST00000346330 718 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 AL355493.1-201ENST00000422707 808 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 AC009948.2-201ENST00000437039 713 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A3P12111 AL592463.1-201ENST00000451108 635 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A3P12111 AC011005.1-201ENST00000467614 1263 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
COL6A3P12111 AL132709.1-205ENST00000556136 551 ntTSL 4 BASIC13.42□□□□□ -0.26
COL6A3P12111 ABHD17AP7-201ENST00000569060 595 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 MIR4725-201ENST00000581700 90 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 RN7SL491P-201ENST00000584748 269 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 AC010618.3-204ENST00000615939 751 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 AC027281.2-201ENST00000623856 713 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 COQ10A-203ENST00000546544 1369 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 ERG-211ENST00000453032 1595 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A3P12111 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A3P12111 NDUFS5-201ENST00000372967 544 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 NDUFS5-202ENST00000372969 548 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 ATP6V1G2-206ENST00000376151 1261 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 CRPP1-201ENST00000412857 625 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 LINC01513-201ENST00000416930 483 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A3P12111 PINX1-203ENST00000519088 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 AC064807.3-201ENST00000523810 470 ntTSL 2 BASIC13.42□□□□□ -0.26
COL6A3P12111 ORMDL2-204ENST00000550836 438 ntTSL 3 BASIC13.42□□□□□ -0.26
COL6A3P12111 AC012555.1-201ENST00000551650 674 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 ENO1P2-201ENST00000557166 974 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 HNRNPA1P62-201ENST00000559372 952 ntBASIC13.42□□□□□ -0.26
COL6A3P12111 AP002478.2-201ENST00000584060 557 ntTSL 4 BASIC13.42□□□□□ -0.26
COL6A3P12111 MXRA7-206ENST00000589082 560 ntAPPRIS ALT2 TSL 4 BASIC13.42□□□□□ -0.26
COL6A3P12111 AC243547.3-202ENST00000625258 192 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL6A3P12111 PRIM1-201ENST00000338193 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 EIF2B3-203ENST00000372183 1457 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 RGPD4-AS1-202ENST00000457647 1792 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL6A3P12111 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL6A3P12111 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 RAD9B-202ENST00000392672 1846 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 SEPT4-204ENST00000412945 1597 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 MOXD2P-201ENST00000460233 1590 ntBASIC13.41□□□□□ -0.26
COL6A3P12111 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A3P12111 KITLG-203ENST00000357116 565 ntTSL 4 BASIC13.41□□□□□ -0.26
COL6A3P12111 RN7SKP170-201ENST00000362550 328 ntBASIC13.41□□□□□ -0.26
COL6A3P12111 CFAP58-201ENST00000369703 466 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 AL139390.1-201ENST00000423568 517 ntTSL 3 BASIC13.41□□□□□ -0.26
COL6A3P12111 KRTAP9-10P-201ENST00000435672 207 ntBASIC13.41□□□□□ -0.26
COL6A3P12111 ATP5G1-204ENST00000503641 539 ntTSL 3 BASIC13.41□□□□□ -0.26
COL6A3P12111 PRDM2-214ENST00000505823 568 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 AC020917.2-201ENST00000587343 401 ntTSL 3 BASIC13.41□□□□□ -0.26
COL6A3P12111 AC007450.4-201ENST00000614709 524 ntBASIC13.41□□□□□ -0.26
COL6A3P12111 LIN28B-AS1-204ENST00000636951 610 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A3P12111 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A3P12111 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 SLC25A30-207ENST00000539591 3608 ntTSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC13.41□□□□□ -0.26
COL6A3P12111 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A3P12111 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms