Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 NPM1P43-201ENST00000558669 786 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC12.31□□□□□ -0.44
SUMO3P55854 MIR4649-201ENST00000582839 64 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC12.31□□□□□ -0.44
SUMO3P55854 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 COQ4-204ENST00000608951 781 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 MIR6858-201ENST00000620733 67 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC12.31□□□□□ -0.44
SUMO3P55854 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 MIR193BHG-211ENST00000641433 5365 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 POM121L14P-201ENST00000406100 1558 ntBASIC12.3□□□□□ -0.44
SUMO3P55854 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
SUMO3P55854 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 AC005252.3-201ENST00000623855 2258 ntBASIC12.3□□□□□ -0.44
SUMO3P55854 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
SUMO3P55854 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC12.3□□□□□ -0.44
SUMO3P55854 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC12.3□□□□□ -0.44
SUMO3P55854 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 HINT1-204ENST00000506908 681 ntTSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 LMO1-204ENST00000534484 770 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC12.3□□□□□ -0.44
SUMO3P55854 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 MIR3147-201ENST00000577811 66 ntBASIC12.3□□□□□ -0.44
SUMO3P55854 AL136982.5-201ENST00000605222 294 ntBASIC12.3□□□□□ -0.44
SUMO3P55854 AL118522.1-201ENST00000611368 560 ntBASIC12.3□□□□□ -0.44
SUMO3P55854 C2orf27AP1-201ENST00000618128 586 ntBASIC12.3□□□□□ -0.44
SUMO3P55854 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC12.3□□□□□ -0.44
SUMO3P55854 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC12.3□□□□□ -0.44
SUMO3P55854 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SUMO3P55854 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC12.29□□□□□ -0.44
SUMO3P55854 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 AC019294.4-201ENST00000561777 2905 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms