Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ORMDL2-201ENST00000243045 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 KLF4-206ENST00000610832 1956 ntTSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 CTAGE13P-201ENST00000416709 2446 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 EGLN3-205ENST00000547327 2849 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 USB1-207ENST00000563149 1751 ntTSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 OR8T1P-201ENST00000421347 918 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC016700.1-201ENST00000429424 312 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC104073.2-201ENST00000453737 312 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AKR7A2P1-201ENST00000460134 915 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC116345.2-201ENST00000512837 523 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 RERG-205ENST00000537647 935 ntTSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AL132994.2-201ENST00000603120 687 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AL157813.1-201ENST00000612996 587 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ZNF133-201ENST00000316358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 AL359510.2-201ENST00000624958 2249 ntBASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
AMBRA1Q9C0C7 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 NRADDP-202ENST00000641269 1585 ntBASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 KRT8P43-201ENST00000406052 1458 ntBASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 AC004554.1-201ENST00000422830 1468 ntBASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 RCC2P5-201ENST00000492126 1487 ntBASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 A1CF-204ENST00000373997 2116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 AC006987.1-201ENST00000413610 527 ntBASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 BX679664.3-201ENST00000414070 555 ntBASIC12.81□□□□□ -0.36
AMBRA1Q9C0C7 AL008707.1-201ENST00000422498 534 ntBASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms