Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 HSD3BP1-201ENST00000286193 1111 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 CASP2-203ENST00000392925 616 ntTSL 3 BASIC13.1□□□□□ -0.31
CLDN6P56747 FTH1P18-201ENST00000412071 549 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC13.1□□□□□ -0.31
CLDN6P56747 KRT18P44-201ENST00000416086 1285 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 AC010900.1-201ENST00000449849 1296 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 B9D1-206ENST00000461069 923 ntTSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 OR4A49P-201ENST00000527050 632 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC13.1□□□□□ -0.31
CLDN6P56747 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC13.1□□□□□ -0.31
CLDN6P56747 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC13.1□□□□□ -0.31
CLDN6P56747 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC13.1□□□□□ -0.31
CLDN6P56747 CCND3P2-201ENST00000579393 537 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 AC005865.2-202ENST00000635814 725 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 AC089987.1-201ENST00000551654 2209 ntBASIC13.1□□□□□ -0.31
CLDN6P56747 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.1□□□□□ -0.31
CLDN6P56747 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.1□□□□□ -0.31
CLDN6P56747 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLDN6P56747 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CLDN6P56747 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.09□□□□□ -0.31
CLDN6P56747 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 AL928921.2-201ENST00000641325 2442 ntBASIC13.09□□□□□ -0.31
CLDN6P56747 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.09□□□□□ -0.31
CLDN6P56747 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.09□□□□□ -0.31
CLDN6P56747 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 MED15P3-201ENST00000413613 326 ntBASIC13.09□□□□□ -0.31
CLDN6P56747 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.09□□□□□ -0.31
CLDN6P56747 AP000533.1-201ENST00000456143 1177 ntBASIC13.09□□□□□ -0.31
CLDN6P56747 RPL29P2-201ENST00000488409 460 ntBASIC13.09□□□□□ -0.31
CLDN6P56747 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 AC093700.1-201ENST00000503348 717 ntBASIC13.09□□□□□ -0.31
CLDN6P56747 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLDN6P56747 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC13.09□□□□□ -0.31
CLDN6P56747 AC011431.1-201ENST00000512971 230 ntBASIC13.09□□□□□ -0.31
CLDN6P56747 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CLDN6P56747 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms