Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
SDCBPO00560 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 SUPT20HL1-201ENST00000436466 2618 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 ZNF667-201ENST00000292069 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 BRWD1P1-201ENST00000401091 371 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC11.72□□□□□ -0.53
SDCBPO00560 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC11.72□□□□□ -0.53
SDCBPO00560 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 AC104073.2-201ENST00000453737 312 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC11.72□□□□□ -0.53
SDCBPO00560 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC11.72□□□□□ -0.53
SDCBPO00560 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 AC022748.3-201ENST00000621828 275 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 AC068587.8-201ENST00000641239 219 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SDCBPO00560 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC11.72□□□□□ -0.53
SDCBPO00560 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 RSPO2-201ENST00000276659 3111 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 AC020763.3-201ENST00000625095 2904 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 TNFSF8-201ENST00000223795 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 HSPA8P9-201ENST00000485881 1943 ntBASIC11.72□□□□□ -0.53
SDCBPO00560 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 MICA-210ENST00000616296 2260 ntTSL 5 BASIC11.71□□□□□ -0.53
SDCBPO00560 NRXN1-233ENST00000630543 4500 ntTSL 5 BASIC11.71□□□□□ -0.53
SDCBPO00560 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
SDCBPO00560 DUT-208ENST00000559540 1441 ntTSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
SDCBPO00560 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 TUBB1P2-201ENST00000422712 1306 ntBASIC11.71□□□□□ -0.53
SDCBPO00560 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 TUBB1P1-201ENST00000503144 1300 ntBASIC11.71□□□□□ -0.53
SDCBPO00560 CASC15-204ENST00000606197 3969 ntTSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 GK-202ENST00000378941 458 ntTSL 3 BASIC11.71□□□□□ -0.53
SDCBPO00560 KRTAP10-13P-201ENST00000412914 571 ntBASIC11.71□□□□□ -0.53
SDCBPO00560 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 PARVG-202ENST00000415224 999 ntTSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC11.71□□□□□ -0.53
SDCBPO00560 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC11.71□□□□□ -0.53
SDCBPO00560 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC11.71□□□□□ -0.53
SDCBPO00560 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC11.71□□□□□ -0.53
SDCBPO00560 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC11.71□□□□□ -0.53
SDCBPO00560 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
SDCBPO00560 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SDCBPO00560 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SDCBPO00560 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SDCBPO00560 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms