Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC006987.1-201ENST00000413610 527 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AC092183.1-201ENST00000469884 875 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RPL18P13-201ENST00000478088 569 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 HNRNPLP1-201ENST00000421896 1501 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AC011481.3-201ENST00000623895 5594 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RBMY1E-203ENST00000382659 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RBMY1D-202ENST00000382680 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RBMY1A1-203ENST00000382707 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RBMY1B-202ENST00000383020 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 PM20D1-201ENST00000367136 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AC007336.3-201ENST00000623886 2160 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 RGS16-201ENST00000367558 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AL033529.1-201ENST00000480336 3447 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 AC138028.6-201ENST00000616106 1482 ntBASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 KLF4-206ENST00000610832 1956 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 GLIPR2-202ENST00000377960 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 SMIM27-203ENST00000451672 2382 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ATG7-213ENST00000446450 2042 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 AL512384.1-201ENST00000406683 331 ntBASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 CACNA2D3-AS1-201ENST00000471265 2078 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 LINC02228-202ENST00000641261 2489 ntBASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 TP53TG5-201ENST00000372726 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 DDX11-223ENST00000542838 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 BCDIN3D-AS1-201ENST00000548872 3078 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC28BQ9BUN5 SPHK2-208ENST00000599029 3085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms