Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
USP39Q53GS9 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC13.96□□□□□ -0.17
USP39Q53GS9 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC13.96□□□□□ -0.17
USP39Q53GS9 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC13.96□□□□□ -0.17
USP39Q53GS9 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 AGAP10P-201ENST00000454844 2418 ntBASIC13.96□□□□□ -0.17
USP39Q53GS9 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.96□□□□□ -0.17
USP39Q53GS9 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.96□□□□□ -0.17
USP39Q53GS9 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
USP39Q53GS9 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
USP39Q53GS9 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
USP39Q53GS9 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
USP39Q53GS9 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
USP39Q53GS9 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
USP39Q53GS9 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.96□□□□□ -0.18
USP39Q53GS9 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
USP39Q53GS9 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.96□□□□□ -0.18
USP39Q53GS9 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.96□□□□□ -0.18
USP39Q53GS9 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
USP39Q53GS9 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.96□□□□□ -0.18
USP39Q53GS9 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
USP39Q53GS9 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.96□□□□□ -0.18
USP39Q53GS9 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
USP39Q53GS9 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.96□□□□□ -0.18
USP39Q53GS9 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
USP39Q53GS9 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 ENPP7P8-202ENST00000527856 1345 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 AL022313.4-201ENST00000562756 2046 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 AL731571.1-201ENST00000617058 5428 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
USP39Q53GS9 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 DKKL1P1-201ENST00000400550 698 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC13.95□□□□□ -0.18
USP39Q53GS9 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 AC087203.1-201ENST00000532111 1181 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 HNRNPA1P16-201ENST00000575692 955 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 AL049840.2-201ENST00000602722 535 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 AL031673.1-201ENST00000611460 466 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 AC005274.1-201ENST00000623460 802 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
USP39Q53GS9 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 FAM90A12P-201ENST00000519497 2375 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 FAM90A24P-201ENST00000520792 2369 ntBASIC13.95□□□□□ -0.18
USP39Q53GS9 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
USP39Q53GS9 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.95□□□□□ -0.18
USP39Q53GS9 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC13.95□□□□□ -0.18
USP39Q53GS9 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
USP39Q53GS9 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
USP39Q53GS9 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
USP39Q53GS9 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
USP39Q53GS9 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.94□□□□□ -0.18
USP39Q53GS9 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 UROS-201ENST00000368774 744 ntTSL 2 BASIC13.94□□□□□ -0.18
USP39Q53GS9 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 AC092570.1-201ENST00000414446 469 ntBASIC13.94□□□□□ -0.18
USP39Q53GS9 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.94□□□□□ -0.18
USP39Q53GS9 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
USP39Q53GS9 AC023906.1-201ENST00000486386 453 ntBASIC13.94□□□□□ -0.18
USP39Q53GS9 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC13.94□□□□□ -0.18
USP39Q53GS9 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms