Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AL355102.3-201ENST00000554299 1678 ntBASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ABCA3-201ENST00000301732 6609 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 C10orf105-201ENST00000398786 4730 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SIGLEC1-201ENST00000344754 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 ABCC3-201ENST00000285238 5716 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 MYRIP-201ENST00000302541 5077 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 DLGAP1-212ENST00000515196 5314 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CAMKK2-205ENST00000392474 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 RBM38-204ENST00000371219 760 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AL136309.1-201ENST00000403917 691 ntBASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 REEP5-205ENST00000504247 480 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 RBM8B-201ENST00000555532 525 ntBASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AL805961.1-203ENST00000641078 1258 ntBASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PCDHGA8-202ENST00000610569 6480 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms