Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LMO1-204ENST00000534484 770 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
SMARCA1P28370 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC15.59■□□□□ 0.09
SMARCA1P28370 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 RN7SL725P-201ENST00000606439 259 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC15.59■□□□□ 0.09
SMARCA1P28370 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SMARCA1P28370 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TBC1D3P1-201ENST00000590047 1693 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 OS9-203ENST00000389142 2457 ntTSL 5 BASIC15.59■□□□□ 0.09
SMARCA1P28370 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
SMARCA1P28370 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.59■□□□□ 0.09
SMARCA1P28370 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC15.59■□□□□ 0.09
SMARCA1P28370 AC092053.3-201ENST00000641308 4975 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 ZSCAN5DP-201ENST00000600684 1488 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SMARCA1P28370 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SMARCA1P28370 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SMARCA1P28370 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SMARCA1P28370 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.58■□□□□ 0.08
SMARCA1P28370 SERPING1-202ENST00000340687 1719 ntTSL 5 BASIC15.58■□□□□ 0.08
SMARCA1P28370 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 AC092903.1-201ENST00000466506 262 ntBASIC15.58■□□□□ 0.08
SMARCA1P28370 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.58■□□□□ 0.08
SMARCA1P28370 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC15.58■□□□□ 0.08
SMARCA1P28370 HNRNPA1P5-201ENST00000558213 966 ntBASIC15.58■□□□□ 0.08
SMARCA1P28370 GOLGA2P7-209ENST00000560408 745 ntBASIC15.58■□□□□ 0.08
SMARCA1P28370 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
SMARCA1P28370 AC005274.1-201ENST00000623460 802 ntBASIC15.58■□□□□ 0.08
SMARCA1P28370 AL031587.5-201ENST00000624344 1849 ntBASIC15.58■□□□□ 0.08
SMARCA1P28370 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SMARCA1P28370 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC15.58■□□□□ 0.08
SMARCA1P28370 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
SMARCA1P28370 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.58■□□□□ 0.08
SMARCA1P28370 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SMARCA1P28370 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC15.58■□□□□ 0.08
SMARCA1P28370 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SMARCA1P28370 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 AC010970.1-201ENST00000445125 1848 ntBASIC15.57■□□□□ 0.08
SMARCA1P28370 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 AC026271.4-201ENST00000578214 1833 ntBASIC15.57■□□□□ 0.08
SMARCA1P28370 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SMARCA1P28370 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC15.57■□□□□ 0.08
SMARCA1P28370 ALG1L7P-201ENST00000502317 768 ntBASIC15.57■□□□□ 0.08
SMARCA1P28370 F11R-204ENST00000537746 1245 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 AP001120.3-201ENST00000585729 489 ntBASIC15.57■□□□□ 0.08
SMARCA1P28370 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC15.57■□□□□ 0.08
SMARCA1P28370 AC002472.4-201ENST00000641915 272 ntBASIC15.57■□□□□ 0.08
SMARCA1P28370 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms