Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC015909.5-201ENST00000624336 2266 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC105206.1-202ENST00000314927 2368 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC152010.1-201ENST00000415779 2006 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 PEG13-201ENST00000631594 5667 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 NUTM2HP-201ENST00000442076 2498 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 OR7E115P-201ENST00000382617 1024 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AL137244.1-201ENST00000422931 865 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 GALP-202ENST00000440823 889 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 PFN2-212ENST00000490975 858 ntTSL 4 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC095040.1-201ENST00000513286 675 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 HNRNPA1P5-201ENST00000558213 966 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 NF1P11-201ENST00000621292 1282 ntBASIC13.29□□□□□ -0.28
COL28A1Q2UY09 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL28A1Q2UY09 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ALG1L15P-201ENST00000482834 794 ntBASIC13.28□□□□□ -0.28
COL28A1Q2UY09 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 MIR4640-201ENST00000581824 90 ntBASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms