Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 RNVU1-8-201ENST00000364272 125 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SNORA50C-201ENST00000408535 133 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 OR52M2P-201ENST00000414298 959 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AC079112.1-201ENST00000454972 939 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 DPY19L2P5-201ENST00000456300 331 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 RPS2P36-201ENST00000456516 831 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AC068867.1-201ENST00000559855 150 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SNORA50.1-201ENST00000628590 135 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 AL118506.1-201ENST00000601296 3082 ntBASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
TRIM39Q9HCM9 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 DKKL1P1-201ENST00000400550 698 ntBASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 AC092638.2-201ENST00000441105 947 ntBASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 RN7SL375P-201ENST00000492442 298 ntBASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 TMCO5B-205ENST00000530020 894 ntBASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 MIR4722-201ENST00000578292 60 ntBASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 MIR3940-201ENST00000579148 102 ntBASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TRIM39Q9HCM9 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms