Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AL356653.1-201ENST00000402743 360 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 TPT1P9-201ENST00000413759 514 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC006328.1-201ENST00000437571 379 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 RPSAP16-201ENST00000447583 821 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC114812.4-201ENST00000506676 757 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 RN7SL478P-201ENST00000584358 298 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC254633.1-201ENST00000606790 345 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC006986.1-201ENST00000612764 241 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC148476.1-201ENST00000622182 705 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AC005865.2-202ENST00000635814 725 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 TCAM1P-207ENST00000485295 1537 ntBASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LYSMD4Q5XG99 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC105443.1-201ENST00000433754 712 ntBASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC092535.4-201ENST00000609548 397 ntBASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 COG6-212ENST00000630730 186 ntTSL 5 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
LYSMD4Q5XG99 ERG-211ENST00000453032 1595 ntTSL 2 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms