Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 POM121L14P-201ENST00000406100 1558 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 PPP1R26P2-201ENST00000611403 3595 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 PCDHA6-201ENST00000378126 3267 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB1P09429 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB1P09429 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB1P09429 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB1P09429 CHCHD2P9-201ENST00000461726 456 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB1P09429 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.23■□□□□ 0.19
HMGB1P09429 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB1P09429 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB1P09429 CHMP4BP1-201ENST00000556017 588 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGB1P09429 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 AC051619.9-201ENST00000623237 597 ntBASIC16.23■□□□□ 0.19
HMGB1P09429 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HMGB1P09429 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB1P09429 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB1P09429 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HMGB1P09429 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB1P09429 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HMGB1P09429 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGB1P09429 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 AC104758.3-203ENST00000562938 2123 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HMGB1P09429 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 A1CF-203ENST00000373995 2211 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGB1P09429 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 IL9RP3-201ENST00000442856 1674 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HMGB1P09429 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 HLA-DMA-203ENST00000395305 777 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HMGB1P09429 SLC25A24P2-201ENST00000415059 510 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 GUSBP10-201ENST00000417412 665 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 AL627422.1-201ENST00000434104 580 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGB1P09429 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGB1P09429 IGLV3-15-201ENST00000518356 244 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 AL009176.1-201ENST00000607876 650 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 AC099521.3-201ENST00000624251 2938 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGB1P09429 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 MSANTD2P1-201ENST00000445341 1368 ntBASIC16.22■□□□□ 0.19
HMGB1P09429 FTX-216ENST00000638985 1367 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HMGB1P09429 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC16.22■□□□□ 0.19
HMGB1P09429 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB1P09429 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB1P09429 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 GDA-203ENST00000376986 1771 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 NUTM2HP-201ENST00000442076 2498 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms