Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 AC127496.7-201ENST00000625110 1798 ntBASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
PCDHA3Q9Y5H8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA3Q9Y5H8 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA3Q9Y5H8 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA3Q9Y5H8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA3Q9Y5H8 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA3Q9Y5H8 AL031848.2-201ENST00000607670 837 ntBASIC23.33■■□□□ 1.33
PCDHA3Q9Y5H8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
PCDHA3Q9Y5H8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHA3Q9Y5H8 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA3Q9Y5H8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 MIR6722-201ENST00000617286 78 ntBASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
PCDHA3Q9Y5H8 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
PCDHA3Q9Y5H8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHA3Q9Y5H8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA3Q9Y5H8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHA3Q9Y5H8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA3Q9Y5H8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA3Q9Y5H8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 AC021242.3-201ENST00000607598 1377 ntBASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.29■■□□□ 1.32
PCDHA3Q9Y5H8 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.28■■□□□ 1.32
PCDHA3Q9Y5H8 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
PCDHA3Q9Y5H8 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms