Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 AC006455.2-201ENST00000429931 906 ntBASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 AC009086.3-201ENST00000623486 1008 ntBASIC20.33■□□□□ 0.85
RPH3AQ9Y2J0 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 SYT6-210ENST00000641643 1587 ntBASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RPH3AQ9Y2J0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 AC092171.4-201ENST00000609130 632 ntBASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 AC241377.3-202ENST00000626088 1088 ntBASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 AC241585.3-202ENST00000628937 1088 ntBASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 AC245100.8-202ENST00000629247 1058 ntBASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPH3AQ9Y2J0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 AC079630.1-202ENST00000618127 1840 ntBASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPH3AQ9Y2J0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 PBX2P1-201ENST00000493219 1291 ntBASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 AL136162.1-201ENST00000607711 1078 ntBASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPH3AQ9Y2J0 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 AC144652.1-201ENST00000609974 1624 ntBASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 DUX4L19-201ENST00000557448 1267 ntBASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 RARRES2P6-201ENST00000567333 442 ntBASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.29■□□□□ 0.84
RPH3AQ9Y2J0 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 SERBP1P1-201ENST00000396021 1160 ntBASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 AC133561.4-201ENST00000566112 224 ntBASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.28■□□□□ 0.84
RPH3AQ9Y2J0 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
RPH3AQ9Y2J0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPH3AQ9Y2J0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.27■□□□□ 0.84
RPH3AQ9Y2J0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
RPH3AQ9Y2J0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPH3AQ9Y2J0 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPH3AQ9Y2J0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RPH3AQ9Y2J0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms