Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.16■■□□□ 1.3
AP4E1Q9UPM8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
AP4E1Q9UPM8 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
AP4E1Q9UPM8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.14■■□□□ 1.3
AP4E1Q9UPM8 AC133561.1-201ENST00000568600 2415 ntBASIC23.14■■□□□ 1.3
AP4E1Q9UPM8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.14■■□□□ 1.3
AP4E1Q9UPM8 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
AP4E1Q9UPM8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
AP4E1Q9UPM8 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.14■■□□□ 1.29
AP4E1Q9UPM8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.14■■□□□ 1.29
AP4E1Q9UPM8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 DUX4L4-201ENST00000566884 1269 ntBASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.13■■□□□ 1.29
AP4E1Q9UPM8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 AL512631.2-201ENST00000604634 923 ntBASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
AP4E1Q9UPM8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.11■■□□□ 1.29
AP4E1Q9UPM8 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
AP4E1Q9UPM8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.09■■□□□ 1.29
AP4E1Q9UPM8 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 AC012676.1-201ENST00000574705 1949 ntBASIC23.08■■□□□ 1.29
AP4E1Q9UPM8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms