Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLCF1Q9UBD9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 ABCB10P4-201ENST00000566803 2184 ntBASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLCF1Q9UBD9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 SLC47A1P1-202ENST00000449666 945 ntBASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.88■□□□□ 0.77
CLCF1Q9UBD9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLCF1Q9UBD9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 AC079630.1-202ENST00000618127 1840 ntBASIC19.86■□□□□ 0.77
CLCF1Q9UBD9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLCF1Q9UBD9 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 OR2I1P-207ENST00000453522 948 ntBASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 RARRES2P6-201ENST00000567333 442 ntBASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLCF1Q9UBD9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 AC126544.1-201ENST00000580842 1059 ntBASIC19.83■□□□□ 0.77
CLCF1Q9UBD9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLCF1Q9UBD9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.83■□□□□ 0.76
CLCF1Q9UBD9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CLCF1Q9UBD9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLCF1Q9UBD9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.82■□□□□ 0.76
CLCF1Q9UBD9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCF1Q9UBD9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCF1Q9UBD9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms