Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SLC47A1P1-202ENST00000449666 945 ntBASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 TSPY26P-201ENST00000476365 1326 ntBASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.3■■□□□ 1.16
TM9SF3Q9HD45 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.3■■□□□ 1.16
TM9SF3Q9HD45 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TM9SF3Q9HD45 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TM9SF3Q9HD45 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
TM9SF3Q9HD45 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TM9SF3Q9HD45 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.29■■□□□ 1.16
TM9SF3Q9HD45 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
TM9SF3Q9HD45 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TM9SF3Q9HD45 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
TM9SF3Q9HD45 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
TM9SF3Q9HD45 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 AC034268.1-201ENST00000441047 882 ntBASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TM9SF3Q9HD45 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TM9SF3Q9HD45 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.27■■□□□ 1.15
TM9SF3Q9HD45 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 YBX1P1-201ENST00000445822 960 ntBASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.26■■□□□ 1.15
TM9SF3Q9HD45 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 AL031602.1-201ENST00000633169 911 ntBASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
TM9SF3Q9HD45 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 HACD1-201ENST00000326961 773 ntTSL 2 BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TM9SF3Q9HD45 AP003733.4-201ENST00000623785 1697 ntBASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 IGHV3-19-201ENST00000521488 291 ntBASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
TM9SF3Q9HD45 AC133637.1-201ENST00000624115 1537 ntBASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 LINC01124-201ENST00000409786 2117 ntBASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TM9SF3Q9HD45 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms