Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
USP42Q9H9J4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
USP42Q9H9J4 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC28.62■■■□□ 2.17
USP42Q9H9J4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
USP42Q9H9J4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
USP42Q9H9J4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.62■■■□□ 2.17
USP42Q9H9J4 TERF1P2-201ENST00000583350 1212 ntBASIC28.62■■■□□ 2.17
USP42Q9H9J4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
USP42Q9H9J4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
USP42Q9H9J4 ALDH1A3-203ENST00000557963 1670 ntBASIC28.61■■■□□ 2.17
USP42Q9H9J4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USP42Q9H9J4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.61■■■□□ 2.17
USP42Q9H9J4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
USP42Q9H9J4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
USP42Q9H9J4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
USP42Q9H9J4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.6■■■□□ 2.17
USP42Q9H9J4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
USP42Q9H9J4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
USP42Q9H9J4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
USP42Q9H9J4 KRT18P14-201ENST00000534205 1250 ntBASIC28.6■■■□□ 2.17
USP42Q9H9J4 NTF6G-201ENST00000591094 616 ntBASIC28.6■■■□□ 2.17
USP42Q9H9J4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
USP42Q9H9J4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
USP42Q9H9J4 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USP42Q9H9J4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.59■■■□□ 2.17
USP42Q9H9J4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USP42Q9H9J4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
USP42Q9H9J4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
USP42Q9H9J4 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
USP42Q9H9J4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC28.58■■■□□ 2.17
USP42Q9H9J4 HLA-L-211ENST00000482052 1765 ntBASIC28.58■■■□□ 2.17
USP42Q9H9J4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
USP42Q9H9J4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
USP42Q9H9J4 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.58■■■□□ 2.17
USP42Q9H9J4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
USP42Q9H9J4 AC133637.1-201ENST00000624115 1537 ntBASIC28.58■■■□□ 2.17
USP42Q9H9J4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
USP42Q9H9J4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
USP42Q9H9J4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.16
USP42Q9H9J4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
USP42Q9H9J4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC28.57■■■□□ 2.16
USP42Q9H9J4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
USP42Q9H9J4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
USP42Q9H9J4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
USP42Q9H9J4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC28.57■■■□□ 2.16
USP42Q9H9J4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC28.57■■■□□ 2.16
USP42Q9H9J4 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC28.57■■■□□ 2.16
USP42Q9H9J4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC28.57■■■□□ 2.16
USP42Q9H9J4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.57■■■□□ 2.16
USP42Q9H9J4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.57■■■□□ 2.16
USP42Q9H9J4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
USP42Q9H9J4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
USP42Q9H9J4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
USP42Q9H9J4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC28.56■■■□□ 2.16
USP42Q9H9J4 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
USP42Q9H9J4 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
USP42Q9H9J4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC28.55■■■□□ 2.16
USP42Q9H9J4 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC28.55■■■□□ 2.16
USP42Q9H9J4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC28.55■■■□□ 2.16
USP42Q9H9J4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP42Q9H9J4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.54■■■□□ 2.16
USP42Q9H9J4 AC010525.1-201ENST00000585559 441 ntBASIC28.54■■■□□ 2.16
USP42Q9H9J4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC28.54■■■□□ 2.16
USP42Q9H9J4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP42Q9H9J4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
USP42Q9H9J4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
USP42Q9H9J4 LINC02228-203ENST00000641970 1355 ntBASIC28.54■■■□□ 2.16
USP42Q9H9J4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP42Q9H9J4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC28.53■■■□□ 2.16
USP42Q9H9J4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP42Q9H9J4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
USP42Q9H9J4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
USP42Q9H9J4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
USP42Q9H9J4 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
USP42Q9H9J4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
USP42Q9H9J4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC28.52■■■□□ 2.16
USP42Q9H9J4 AL499627.2-201ENST00000606283 725 ntBASIC28.52■■■□□ 2.16
USP42Q9H9J4 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC28.52■■■□□ 2.16
USP42Q9H9J4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC28.52■■■□□ 2.16
USP42Q9H9J4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.16
USP42Q9H9J4 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
USP42Q9H9J4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC28.51■■■□□ 2.15
USP42Q9H9J4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC28.51■■■□□ 2.15
USP42Q9H9J4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC28.51■■■□□ 2.15
USP42Q9H9J4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
USP42Q9H9J4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC28.5■■■□□ 2.15
USP42Q9H9J4 OR2I1P-207ENST00000453522 948 ntBASIC28.5■■■□□ 2.15
USP42Q9H9J4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC28.5■■■□□ 2.15
USP42Q9H9J4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.5■■■□□ 2.15
USP42Q9H9J4 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC28.5■■■□□ 2.15
USP42Q9H9J4 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC28.5■■■□□ 2.15
USP42Q9H9J4 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
USP42Q9H9J4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms