Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 AL139246.5-201ENST00000606645 996 ntBASIC26.38■■□□□ 1.81
RNF41Q9H4P4 AL136162.1-201ENST00000607711 1078 ntBASIC26.38■■□□□ 1.81
RNF41Q9H4P4 AC011298.3-201ENST00000615796 283 ntBASIC26.38■■□□□ 1.81
RNF41Q9H4P4 AC110285.6-201ENST00000617652 491 ntBASIC26.38■■□□□ 1.81
RNF41Q9H4P4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF41Q9H4P4 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
RNF41Q9H4P4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RNF41Q9H4P4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 AC135279.3-201ENST00000610945 1311 ntBASIC26.35■■□□□ 1.81
RNF41Q9H4P4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF41Q9H4P4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC26.34■■□□□ 1.81
RNF41Q9H4P4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 AC024257.2-201ENST00000549699 147 ntBASIC26.33■■□□□ 1.81
RNF41Q9H4P4 AC106739.1-201ENST00000617035 715 ntBASIC26.33■■□□□ 1.81
RNF41Q9H4P4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
RNF41Q9H4P4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
RNF41Q9H4P4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.33■■□□□ 1.8
RNF41Q9H4P4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF41Q9H4P4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
RNF41Q9H4P4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF41Q9H4P4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF41Q9H4P4 PBX2P1-201ENST00000493219 1291 ntBASIC26.32■■□□□ 1.8
RNF41Q9H4P4 AC136469.2-201ENST00000623944 1028 ntBASIC26.32■■□□□ 1.8
RNF41Q9H4P4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
RNF41Q9H4P4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 DUSP8P3-201ENST00000399571 1760 ntBASIC26.31■■□□□ 1.8
RNF41Q9H4P4 AC133637.1-201ENST00000624115 1537 ntBASIC26.31■■□□□ 1.8
RNF41Q9H4P4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF41Q9H4P4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RNF41Q9H4P4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms