Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF38Q9H0F5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.24■■□□□ 1.31
RNF38Q9H0F5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.24■■□□□ 1.31
RNF38Q9H0F5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF38Q9H0F5 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF38Q9H0F5 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 IRS3P-201ENST00000223076 1006 ntBASIC23.23■■□□□ 1.31
RNF38Q9H0F5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.23■■□□□ 1.31
RNF38Q9H0F5 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
RNF38Q9H0F5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.22■■□□□ 1.31
RNF38Q9H0F5 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF38Q9H0F5 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF38Q9H0F5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.22■■□□□ 1.31
RNF38Q9H0F5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
RNF38Q9H0F5 AC126544.1-201ENST00000580842 1059 ntBASIC23.22■■□□□ 1.31
RNF38Q9H0F5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
RNF38Q9H0F5 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF38Q9H0F5 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF38Q9H0F5 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 AC079630.1-202ENST00000618127 1840 ntBASIC23.2■■□□□ 1.3
RNF38Q9H0F5 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 AC010525.1-201ENST00000585559 441 ntBASIC23.2■■□□□ 1.3
RNF38Q9H0F5 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RNF38Q9H0F5 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
RNF38Q9H0F5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
RNF38Q9H0F5 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF38Q9H0F5 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.16■■□□□ 1.3
RNF38Q9H0F5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 TSPY26P-201ENST00000476365 1326 ntBASIC23.15■■□□□ 1.3
RNF38Q9H0F5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 MIR6821-201ENST00000617625 74 ntBASIC23.15■■□□□ 1.3
RNF38Q9H0F5 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF38Q9H0F5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF38Q9H0F5 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms