Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TIMP4Q99727 UNC93B3-201ENST00000308076 687 ntBASIC20.48■□□□□ 0.87
TIMP4Q99727 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
TIMP4Q99727 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TIMP4Q99727 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.48■□□□□ 0.87
TIMP4Q99727 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TIMP4Q99727 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TIMP4Q99727 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TIMP4Q99727 AC009102.2-201ENST00000606772 1639 ntBASIC20.47■□□□□ 0.87
TIMP4Q99727 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.47■□□□□ 0.87
TIMP4Q99727 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.47■□□□□ 0.87
TIMP4Q99727 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TIMP4Q99727 AC133561.4-201ENST00000566112 224 ntBASIC20.47■□□□□ 0.87
TIMP4Q99727 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
TIMP4Q99727 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TIMP4Q99727 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.46■□□□□ 0.87
TIMP4Q99727 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.46■□□□□ 0.87
TIMP4Q99727 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TIMP4Q99727 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.46■□□□□ 0.87
TIMP4Q99727 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TIMP4Q99727 PBX2P1-201ENST00000493219 1291 ntBASIC20.46■□□□□ 0.87
TIMP4Q99727 AC005837.3-201ENST00000612163 286 ntBASIC20.46■□□□□ 0.87
TIMP4Q99727 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TIMP4Q99727 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TIMP4Q99727 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TIMP4Q99727 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TIMP4Q99727 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
TIMP4Q99727 ALDH1A3-203ENST00000557963 1670 ntBASIC20.45■□□□□ 0.86
TIMP4Q99727 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.45■□□□□ 0.86
TIMP4Q99727 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 AC106739.1-201ENST00000617035 715 ntBASIC20.45■□□□□ 0.86
TIMP4Q99727 CLDN5-201ENST00000403084 2357 ntBASIC20.45■□□□□ 0.86
TIMP4Q99727 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TIMP4Q99727 AL117328.2-201ENST00000624617 1940 ntBASIC20.45■□□□□ 0.86
TIMP4Q99727 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TIMP4Q99727 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
TIMP4Q99727 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.44■□□□□ 0.86
TIMP4Q99727 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.44■□□□□ 0.86
TIMP4Q99727 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TIMP4Q99727 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.44■□□□□ 0.86
TIMP4Q99727 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.44■□□□□ 0.86
TIMP4Q99727 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.44■□□□□ 0.86
TIMP4Q99727 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TIMP4Q99727 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.43■□□□□ 0.86
TIMP4Q99727 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TIMP4Q99727 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TIMP4Q99727 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TIMP4Q99727 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TIMP4Q99727 DUX4L19-201ENST00000557448 1267 ntBASIC20.43■□□□□ 0.86
TIMP4Q99727 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.43■□□□□ 0.86
TIMP4Q99727 AL136162.1-201ENST00000607711 1078 ntBASIC20.43■□□□□ 0.86
TIMP4Q99727 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TIMP4Q99727 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.43■□□□□ 0.86
TIMP4Q99727 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.43■□□□□ 0.86
TIMP4Q99727 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TIMP4Q99727 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
TIMP4Q99727 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.42■□□□□ 0.86
TIMP4Q99727 ANOS2P-203ENST00000472227 1816 ntBASIC20.42■□□□□ 0.86
TIMP4Q99727 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.42■□□□□ 0.86
TIMP4Q99727 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.42■□□□□ 0.86
TIMP4Q99727 AC092171.4-201ENST00000609130 632 ntBASIC20.42■□□□□ 0.86
TIMP4Q99727 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.42■□□□□ 0.86
TIMP4Q99727 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TIMP4Q99727 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.42■□□□□ 0.86
TIMP4Q99727 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TIMP4Q99727 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.42■□□□□ 0.86
TIMP4Q99727 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.41■□□□□ 0.86
TIMP4Q99727 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TIMP4Q99727 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.41■□□□□ 0.86
TIMP4Q99727 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.41■□□□□ 0.86
TIMP4Q99727 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.41■□□□□ 0.86
TIMP4Q99727 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.41■□□□□ 0.86
TIMP4Q99727 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.41■□□□□ 0.86
TIMP4Q99727 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.41■□□□□ 0.86
TIMP4Q99727 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TIMP4Q99727 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TIMP4Q99727 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms