Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL136162.1-201ENST00000607711 1078 ntBASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.02■□□□□ 0.96
PTCHD1Q96NR3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PTCHD1Q96NR3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.02■□□□□ 0.95
PTCHD1Q96NR3 AC079630.1-202ENST00000618127 1840 ntBASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD1Q96NR3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PTCHD1Q96NR3 SERBP1P1-201ENST00000396021 1160 ntBASIC21■□□□□ 0.95
PTCHD1Q96NR3 PTCHD3P2-201ENST00000424937 1205 ntBASIC21■□□□□ 0.95
PTCHD1Q96NR3 SF1-220ENST00000626028 704 ntTSL 2 BASIC21■□□□□ 0.95
PTCHD1Q96NR3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21■□□□□ 0.95
PTCHD1Q96NR3 LINC01529-204ENST00000636474 1715 ntBASIC21■□□□□ 0.95
PTCHD1Q96NR3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTCHD1Q96NR3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
PTCHD1Q96NR3 H19-210ENST00000439725 1929 ntTSL 2 BASIC21■□□□□ 0.95
PTCHD1Q96NR3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PTCHD1Q96NR3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 AC024257.2-201ENST00000549699 147 ntBASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 AC135279.3-201ENST00000610945 1311 ntBASIC20.98■□□□□ 0.95
PTCHD1Q96NR3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 DUX4L4-201ENST00000566884 1269 ntBASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 pRNA.6-201ENST00000610482 90 ntBASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 pRNA.5-201ENST00000612139 90 ntBASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 AC106739.1-201ENST00000617035 715 ntBASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 pRNA.11-201ENST00000618423 90 ntBASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 pRNA.13-201ENST00000619112 90 ntBASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD1Q96NR3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 MIR3181-201ENST00000578512 73 ntBASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 AL138724.1-201ENST00000606771 1088 ntBASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD1Q96NR3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.95■□□□□ 0.95
PTCHD1Q96NR3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
PTCHD1Q96NR3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.95■□□□□ 0.94
PTCHD1Q96NR3 ANOS2P-203ENST00000472227 1816 ntBASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.94■□□□□ 0.94
PTCHD1Q96NR3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms