Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC140Q96MF4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
CCDC140Q96MF4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CCDC140Q96MF4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC140Q96MF4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC140Q96MF4 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC140Q96MF4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 DUX4L4-201ENST00000566884 1269 ntBASIC17.27■□□□□ 0.36
CCDC140Q96MF4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 AL512631.2-201ENST00000604634 923 ntBASIC17.27■□□□□ 0.36
CCDC140Q96MF4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC140Q96MF4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC140Q96MF4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC140Q96MF4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC140Q96MF4 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC140Q96MF4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC140Q96MF4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 AC012676.1-201ENST00000574705 1949 ntBASIC17.25■□□□□ 0.35
CCDC140Q96MF4 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC140Q96MF4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.24■□□□□ 0.35
CCDC140Q96MF4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC140Q96MF4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 C1orf229-201ENST00000623686 2258 ntBASIC17.23■□□□□ 0.35
CCDC140Q96MF4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC140Q96MF4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms