Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 MIR6089-201ENST00000616698 64 ntBASIC6.81□□□□□ -1.32
SYNE1Q8NF91 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 SNX3-202ENST00000349379 890 ntTSL 2 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 RARRES2P11-201ENST00000635158 484 ntBASIC6.81□□□□□ -1.32
SYNE1Q8NF91 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 AC027612.3-201ENST00000413684 1047 ntBASIC6.81□□□□□ -1.32
SYNE1Q8NF91 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 PTMA-205ENST00000410064 814 ntTSL 2 BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SYNE1Q8NF91 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 NKILA-201ENST00000613231 537 ntTSL 4 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 AC091060.1-201ENST00000623524 1766 ntBASIC6.8□□□□□ -1.32
SYNE1Q8NF91 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 YBX1P1-201ENST00000445822 960 ntBASIC6.8□□□□□ -1.32
SYNE1Q8NF91 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SYNE1Q8NF91 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 KRT18P5-201ENST00000436075 1291 ntBASIC6.79□□□□□ -1.32
SYNE1Q8NF91 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 USF2-207ENST00000595068 1612 ntTSL 5 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms