Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
NUP54Q7Z3B4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.58■□□□□ 0.88
NUP54Q7Z3B4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.58■□□□□ 0.88
NUP54Q7Z3B4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NUP54Q7Z3B4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
NUP54Q7Z3B4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 DUX4L4-201ENST00000566884 1269 ntBASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP54Q7Z3B4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 LINC01529-204ENST00000636474 1715 ntBASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 AC079630.1-202ENST00000618127 1840 ntBASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 AC009086.3-201ENST00000623486 1008 ntBASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 AC012676.1-201ENST00000574705 1949 ntBASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP54Q7Z3B4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP54Q7Z3B4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 ANOS2P-203ENST00000472227 1816 ntBASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 SYT6-210ENST00000641643 1587 ntBASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
NUP54Q7Z3B4 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP54Q7Z3B4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 UNC93B3-201ENST00000308076 687 ntBASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP54Q7Z3B4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms