Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 AL022069.1-201ENST00000568025 1636 ntBASIC25.88■■□□□ 1.73
CCDC144BQ3MJ40 CA15P2-201ENST00000611168 834 ntBASIC25.87■■□□□ 1.73
CCDC144BQ3MJ40 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
CCDC144BQ3MJ40 RASA4CP-201ENST00000424092 1398 ntBASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 AC104564.3-201ENST00000582367 638 ntBASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC144BQ3MJ40 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 AL138724.1-201ENST00000606771 1088 ntBASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 AC011298.3-201ENST00000615796 283 ntBASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.84■■□□□ 1.73
CCDC144BQ3MJ40 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC144BQ3MJ40 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.83■■□□□ 1.72
CCDC144BQ3MJ40 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 AC027682.1-201ENST00000562846 899 ntBASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 AC008764.7-201ENST00000593779 1081 ntBASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 MIR6821-201ENST00000617625 74 ntBASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 C17orf82-201ENST00000623772 1530 ntBASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
CCDC144BQ3MJ40 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
CCDC144BQ3MJ40 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.8■■□□□ 1.72
CCDC144BQ3MJ40 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC144BQ3MJ40 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC144BQ3MJ40 AC097381.1-201ENST00000429019 1296 ntBASIC25.79■■□□□ 1.72
CCDC144BQ3MJ40 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
CCDC144BQ3MJ40 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC144BQ3MJ40 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
CCDC144BQ3MJ40 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 ANKRD20A6P-201ENST00000618763 204 ntBASIC25.78■■□□□ 1.72
CCDC144BQ3MJ40 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 AC099791.1-201ENST00000416440 715 ntBASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.77■■□□□ 1.72
CCDC144BQ3MJ40 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.77■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms