Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PRKDCP78527 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC16.47■□□□□ 0.23
PRKDCP78527 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PRKDCP78527 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.47■□□□□ 0.23
PRKDCP78527 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC16.47■□□□□ 0.23
PRKDCP78527 AC005181.1-201ENST00000604782 1256 ntBASIC16.47■□□□□ 0.23
PRKDCP78527 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PRKDCP78527 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC16.47■□□□□ 0.23
PRKDCP78527 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PRKDCP78527 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKDCP78527 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
PRKDCP78527 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKDCP78527 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKDCP78527 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKDCP78527 MIR1224-201ENST00000408193 85 ntBASIC16.46■□□□□ 0.23
PRKDCP78527 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKDCP78527 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PRKDCP78527 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.46■□□□□ 0.23
PRKDCP78527 AL121832.2-201ENST00000610979 668 ntBASIC16.46■□□□□ 0.23
PRKDCP78527 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKDCP78527 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PRKDCP78527 ECEL1P3-201ENST00000427961 737 ntBASIC16.46■□□□□ 0.22
PRKDCP78527 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PRKDCP78527 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PRKDCP78527 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKDCP78527 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKDCP78527 AC211429.1-201ENST00000415277 523 ntBASIC16.45■□□□□ 0.22
PRKDCP78527 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC16.45■□□□□ 0.22
PRKDCP78527 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKDCP78527 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PRKDCP78527 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PRKDCP78527 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.45■□□□□ 0.22
PRKDCP78527 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PRKDCP78527 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PRKDCP78527 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKDCP78527 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC16.44■□□□□ 0.22
PRKDCP78527 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PRKDCP78527 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKDCP78527 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 DUX4L16-201ENST00000555130 1264 ntBASIC16.44■□□□□ 0.22
PRKDCP78527 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKDCP78527 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 CNN2P6-201ENST00000439038 900 ntBASIC16.44■□□□□ 0.22
PRKDCP78527 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 AC010525.1-201ENST00000585559 441 ntBASIC16.44■□□□□ 0.22
PRKDCP78527 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.44■□□□□ 0.22
PRKDCP78527 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.44■□□□□ 0.22
PRKDCP78527 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKDCP78527 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.43■□□□□ 0.22
PRKDCP78527 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKDCP78527 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.43■□□□□ 0.22
PRKDCP78527 SLC29A4P1-201ENST00000398760 971 ntBASIC16.43■□□□□ 0.22
PRKDCP78527 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.43■□□□□ 0.22
PRKDCP78527 OR2I1P-207ENST00000453522 948 ntBASIC16.43■□□□□ 0.22
PRKDCP78527 AC008550.1-201ENST00000511500 884 ntBASIC16.43■□□□□ 0.22
PRKDCP78527 DUX4L4-201ENST00000566884 1269 ntBASIC16.43■□□□□ 0.22
PRKDCP78527 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.43■□□□□ 0.22
PRKDCP78527 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PRKDCP78527 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PRKDCP78527 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.43■□□□□ 0.22
PRKDCP78527 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PRKDCP78527 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKDCP78527 ERN1-208ENST00000606895 2068 ntBASIC16.43■□□□□ 0.22
PRKDCP78527 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKDCP78527 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
PRKDCP78527 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKDCP78527 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.43■□□□□ 0.22
PRKDCP78527 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC16.42■□□□□ 0.22
PRKDCP78527 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKDCP78527 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC16.42■□□□□ 0.22
PRKDCP78527 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKDCP78527 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKDCP78527 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.42■□□□□ 0.22
PRKDCP78527 AC105233.4-201ENST00000642045 216 ntBASIC16.42■□□□□ 0.22
PRKDCP78527 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKDCP78527 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKDCP78527 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PRKDCP78527 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKDCP78527 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms