Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTPN9P43378 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.26■■□□□ 1.31
PTPN9P43378 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTPN9P43378 AC068473.5-201ENST00000616428 2072 ntBASIC23.26■■□□□ 1.31
PTPN9P43378 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.26■■□□□ 1.31
PTPN9P43378 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTPN9P43378 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PTPN9P43378 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PTPN9P43378 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.26■■□□□ 1.31
PTPN9P43378 AC241377.3-202ENST00000626088 1088 ntBASIC23.26■■□□□ 1.31
PTPN9P43378 AC241585.3-202ENST00000628937 1088 ntBASIC23.26■■□□□ 1.31
PTPN9P43378 AC245100.8-202ENST00000629247 1058 ntBASIC23.26■■□□□ 1.31
PTPN9P43378 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PTPN9P43378 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
PTPN9P43378 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
PTPN9P43378 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PTPN9P43378 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.25■■□□□ 1.31
PTPN9P43378 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PTPN9P43378 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.25■■□□□ 1.31
PTPN9P43378 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.25■■□□□ 1.31
PTPN9P43378 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.25■■□□□ 1.31
PTPN9P43378 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.25■■□□□ 1.31
PTPN9P43378 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTPN9P43378 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTPN9P43378 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTPN9P43378 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTPN9P43378 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTPN9P43378 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.24■■□□□ 1.31
PTPN9P43378 C9orf163-202ENST00000624034 2573 ntBASIC23.24■■□□□ 1.31
PTPN9P43378 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.24■■□□□ 1.31
PTPN9P43378 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTPN9P43378 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.24■■□□□ 1.31
PTPN9P43378 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.24■■□□□ 1.31
PTPN9P43378 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.24■■□□□ 1.31
PTPN9P43378 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.24■■□□□ 1.31
PTPN9P43378 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PTPN9P43378 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
PTPN9P43378 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.24■■□□□ 1.31
PTPN9P43378 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.24■■□□□ 1.31
PTPN9P43378 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.23■■□□□ 1.31
PTPN9P43378 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTPN9P43378 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.23■■□□□ 1.31
PTPN9P43378 AC131281.2-201ENST00000520478 145 ntBASIC23.23■■□□□ 1.31
PTPN9P43378 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.23■■□□□ 1.31
PTPN9P43378 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTPN9P43378 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTPN9P43378 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.22■■□□□ 1.31
PTPN9P43378 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PTPN9P43378 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PTPN9P43378 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PTPN9P43378 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PTPN9P43378 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.22■■□□□ 1.31
PTPN9P43378 SRD5A1P1-201ENST00000442297 786 ntBASIC23.22■■□□□ 1.31
PTPN9P43378 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.22■■□□□ 1.31
PTPN9P43378 MIR4466-201ENST00000606121 54 ntBASIC23.22■■□□□ 1.31
PTPN9P43378 AC009086.3-201ENST00000623486 1008 ntBASIC23.22■■□□□ 1.31
PTPN9P43378 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.22■■□□□ 1.31
PTPN9P43378 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.22■■□□□ 1.31
PTPN9P43378 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.22■■□□□ 1.31
PTPN9P43378 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PTPN9P43378 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.22■■□□□ 1.31
PTPN9P43378 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.22■■□□□ 1.31
PTPN9P43378 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTPN9P43378 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTPN9P43378 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
PTPN9P43378 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
PTPN9P43378 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
PTPN9P43378 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.21■■□□□ 1.31
PTPN9P43378 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
PTPN9P43378 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PTPN9P43378 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.21■■□□□ 1.31
PTPN9P43378 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
PTPN9P43378 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTPN9P43378 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTPN9P43378 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.2■■□□□ 1.3
PTPN9P43378 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PTPN9P43378 AL499627.2-201ENST00000606283 725 ntBASIC23.2■■□□□ 1.3
PTPN9P43378 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PTPN9P43378 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
PTPN9P43378 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.19■■□□□ 1.3
PTPN9P43378 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.19■■□□□ 1.3
PTPN9P43378 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.19■■□□□ 1.3
PTPN9P43378 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
PTPN9P43378 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.19■■□□□ 1.3
PTPN9P43378 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.19■■□□□ 1.3
PTPN9P43378 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTPN9P43378 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PTPN9P43378 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.19■■□□□ 1.3
PTPN9P43378 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTPN9P43378 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTPN9P43378 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.18■■□□□ 1.3
PTPN9P43378 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTPN9P43378 AC099791.2-201ENST00000605725 427 ntBASIC23.18■■□□□ 1.3
PTPN9P43378 AC131212.1-201ENST00000613771 668 ntBASIC23.18■■□□□ 1.3
PTPN9P43378 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
PTPN9P43378 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
PTPN9P43378 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
PTPN9P43378 AC012676.1-201ENST00000574705 1949 ntBASIC23.18■■□□□ 1.3
PTPN9P43378 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
PTPN9P43378 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms