Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC6A1P30531 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SLC6A1P30531 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
SLC6A1P30531 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.2■□□□□ 0.66
SLC6A1P30531 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC6A1P30531 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SLC6A1P30531 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SLC6A1P30531 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SLC6A1P30531 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.19■□□□□ 0.66
SLC6A1P30531 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.19■□□□□ 0.66
SLC6A1P30531 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC6A1P30531 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SLC6A1P30531 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SLC6A1P30531 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 U85056.1-201ENST00000616429 682 ntBASIC19.18■□□□□ 0.66
SLC6A1P30531 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.18■□□□□ 0.66
SLC6A1P30531 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC6A1P30531 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SLC6A1P30531 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC6A1P30531 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.17■□□□□ 0.66
SLC6A1P30531 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SLC6A1P30531 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC6A1P30531 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SLC6A1P30531 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SLC6A1P30531 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.17■□□□□ 0.66
SLC6A1P30531 AC025884.2-201ENST00000553429 711 ntBASIC19.17■□□□□ 0.66
SLC6A1P30531 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.17■□□□□ 0.66
SLC6A1P30531 PKD1P6-201ENST00000343738 4769 ntBASIC19.17■□□□□ 0.66
SLC6A1P30531 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SLC6A1P30531 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC6A1P30531 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SLC6A1P30531 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC6A1P30531 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.16■□□□□ 0.66
SLC6A1P30531 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SLC6A1P30531 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.16■□□□□ 0.66
SLC6A1P30531 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.16■□□□□ 0.66
SLC6A1P30531 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SLC6A1P30531 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC6A1P30531 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC6A1P30531 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SLC6A1P30531 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SLC6A1P30531 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
SLC6A1P30531 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.15■□□□□ 0.66
SLC6A1P30531 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.15■□□□□ 0.66
SLC6A1P30531 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.15■□□□□ 0.66
SLC6A1P30531 MIR3960-201ENST00000583311 91 ntBASIC19.15■□□□□ 0.66
SLC6A1P30531 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
SLC6A1P30531 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.15■□□□□ 0.66
SLC6A1P30531 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SLC6A1P30531 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SLC6A1P30531 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
SLC6A1P30531 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.14■□□□□ 0.66
SLC6A1P30531 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SLC6A1P30531 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC6A1P30531 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SLC6A1P30531 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC6A1P30531 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC6A1P30531 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC6A1P30531 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC6A1P30531 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.14■□□□□ 0.65
SLC6A1P30531 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC6A1P30531 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC6A1P30531 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC6A1P30531 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC6A1P30531 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SLC6A1P30531 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC6A1P30531 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC6A1P30531 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms