Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHC1P29353 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.4■□□□□ 0.86
SHC1P29353 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
SHC1P29353 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SHC1P29353 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SHC1P29353 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHC1P29353 AL117328.2-201ENST00000624617 1940 ntBASIC20.39■□□□□ 0.86
SHC1P29353 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHC1P29353 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.39■□□□□ 0.86
SHC1P29353 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SHC1P29353 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.39■□□□□ 0.85
SHC1P29353 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.39■□□□□ 0.85
SHC1P29353 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.39■□□□□ 0.85
SHC1P29353 AL356740.2-201ENST00000601559 647 ntBASIC20.39■□□□□ 0.85
SHC1P29353 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SHC1P29353 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHC1P29353 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHC1P29353 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHC1P29353 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.38■□□□□ 0.85
SHC1P29353 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHC1P29353 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHC1P29353 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHC1P29353 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.37■□□□□ 0.85
SHC1P29353 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SHC1P29353 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.37■□□□□ 0.85
SHC1P29353 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.37■□□□□ 0.85
SHC1P29353 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.37■□□□□ 0.85
SHC1P29353 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SHC1P29353 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHC1P29353 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHC1P29353 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHC1P29353 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SHC1P29353 AC131281.2-201ENST00000520478 145 ntBASIC20.36■□□□□ 0.85
SHC1P29353 AL512631.2-201ENST00000604634 923 ntBASIC20.36■□□□□ 0.85
SHC1P29353 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.36■□□□□ 0.85
SHC1P29353 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SHC1P29353 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHC1P29353 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.36■□□□□ 0.85
SHC1P29353 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SHC1P29353 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHC1P29353 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHC1P29353 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.35■□□□□ 0.85
SHC1P29353 AC009102.2-201ENST00000606772 1639 ntBASIC20.35■□□□□ 0.85
SHC1P29353 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHC1P29353 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.35■□□□□ 0.85
SHC1P29353 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.35■□□□□ 0.85
SHC1P29353 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.35■□□□□ 0.85
SHC1P29353 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHC1P29353 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHC1P29353 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHC1P29353 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.35■□□□□ 0.85
SHC1P29353 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
SHC1P29353 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHC1P29353 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHC1P29353 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.34■□□□□ 0.85
SHC1P29353 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.34■□□□□ 0.85
SHC1P29353 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHC1P29353 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHC1P29353 MIR4466-201ENST00000606121 54 ntBASIC20.34■□□□□ 0.85
SHC1P29353 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SHC1P29353 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHC1P29353 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHC1P29353 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHC1P29353 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHC1P29353 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHC1P29353 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.33■□□□□ 0.85
SHC1P29353 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.33■□□□□ 0.85
SHC1P29353 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.33■□□□□ 0.85
SHC1P29353 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
SHC1P29353 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHC1P29353 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHC1P29353 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHC1P29353 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHC1P29353 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.32■□□□□ 0.84
SHC1P29353 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.32■□□□□ 0.84
SHC1P29353 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
SHC1P29353 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.32■□□□□ 0.84
SHC1P29353 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.32■□□□□ 0.84
SHC1P29353 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms