Protein–RNA interactions for Protein: P09661

SNRPA1, U2 small nuclear ribonucleoprotein A', humanhuman

Known RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1P09661 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC28.72■■■□□ 2.19
SNRPA1P09661 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SNRPA1P09661 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
SNRPA1P09661 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.71■■■□□ 2.19
SNRPA1P09661 MIR572-201ENST00000384983 95 ntBASIC28.71■■■□□ 2.19
SNRPA1P09661 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SNRPA1P09661 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
SNRPA1P09661 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SNRPA1P09661 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
SNRPA1P09661 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC28.71■■■□□ 2.19
SNRPA1P09661 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SNRPA1P09661 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SNRPA1P09661 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SNRPA1P09661 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SNRPA1P09661 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC28.7■■■□□ 2.18
SNRPA1P09661 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SNRPA1P09661 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC28.7■■■□□ 2.18
SNRPA1P09661 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SNRPA1P09661 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
SNRPA1P09661 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC28.7■■■□□ 2.18
SNRPA1P09661 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
SNRPA1P09661 LINC01124-201ENST00000409786 2117 ntBASIC28.7■■■□□ 2.18
SNRPA1P09661 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
SNRPA1P09661 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
SNRPA1P09661 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
SNRPA1P09661 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.69■■■□□ 2.18
SNRPA1P09661 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.69■■■□□ 2.18
SNRPA1P09661 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.69■■■□□ 2.18
SNRPA1P09661 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.69■■■□□ 2.18
SNRPA1P09661 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SNRPA1P09661 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SNRPA1P09661 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC28.68■■■□□ 2.18
SNRPA1P09661 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
SNRPA1P09661 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.68■■■□□ 2.18
SNRPA1P09661 YBX1P1-201ENST00000445822 960 ntBASIC28.68■■■□□ 2.18
SNRPA1P09661 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
SNRPA1P09661 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.68■■■□□ 2.18
SNRPA1P09661 AL358852.1-201ENST00000623174 1268 ntBASIC28.68■■■□□ 2.18
SNRPA1P09661 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC28.68■■■□□ 2.18
SNRPA1P09661 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SNRPA1P09661 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
SNRPA1P09661 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SNRPA1P09661 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SNRPA1P09661 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.67■■■□□ 2.18
SNRPA1P09661 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SNRPA1P09661 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC28.67■■■□□ 2.18
SNRPA1P09661 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.67■■■□□ 2.18
SNRPA1P09661 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.67■■■□□ 2.18
SNRPA1P09661 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28.67■■■□□ 2.18
SNRPA1P09661 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC28.67■■■□□ 2.18
SNRPA1P09661 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SNRPA1P09661 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SNRPA1P09661 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SNRPA1P09661 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.66■■■□□ 2.18
SNRPA1P09661 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC28.66■■■□□ 2.18
SNRPA1P09661 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SNRPA1P09661 AC004812.2-201ENST00000611079 2094 ntBASIC28.65■■■□□ 2.18
SNRPA1P09661 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC28.65■■■□□ 2.18
SNRPA1P09661 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SNRPA1P09661 AL031602.1-201ENST00000633169 911 ntBASIC28.65■■■□□ 2.18
SNRPA1P09661 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.65■■■□□ 2.18
SNRPA1P09661 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC28.65■■■□□ 2.18
SNRPA1P09661 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SNRPA1P09661 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
SNRPA1P09661 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC28.64■■■□□ 2.18
SNRPA1P09661 AL139125.2-201ENST00000623134 1869 ntBASIC28.64■■■□□ 2.18
SNRPA1P09661 AC027612.3-201ENST00000413684 1047 ntBASIC28.64■■■□□ 2.18
SNRPA1P09661 AC034268.1-201ENST00000441047 882 ntBASIC28.64■■■□□ 2.18
SNRPA1P09661 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SNRPA1P09661 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.64■■■□□ 2.18
SNRPA1P09661 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SNRPA1P09661 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.17
SNRPA1P09661 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
SNRPA1P09661 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SNRPA1P09661 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
SNRPA1P09661 GLI3-203ENST00000437480 451 ntTSL 2 BASIC28.63■■■□□ 2.17
SNRPA1P09661 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SNRPA1P09661 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC28.62■■■□□ 2.17
SNRPA1P09661 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.62■■■□□ 2.17
SNRPA1P09661 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.62■■■□□ 2.17
SNRPA1P09661 AP005435.1-201ENST00000529293 1178 ntBASIC28.62■■■□□ 2.17
SNRPA1P09661 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 AC012414.1-201ENST00000556676 535 ntBASIC28.62■■■□□ 2.17
SNRPA1P09661 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.62■■■□□ 2.17
SNRPA1P09661 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SNRPA1P09661 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SNRPA1P09661 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms