Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.5■■□□□ 1.51
TPM1P09493 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC24.5■■□□□ 1.51
TPM1P09493 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TPM1P09493 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TPM1P09493 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TPM1P09493 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
TPM1P09493 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
TPM1P09493 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
TPM1P09493 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TPM1P09493 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.49■■□□□ 1.51
TPM1P09493 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TPM1P09493 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
TPM1P09493 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
TPM1P09493 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TPM1P09493 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TPM1P09493 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.49■■□□□ 1.51
TPM1P09493 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.49■■□□□ 1.51
TPM1P09493 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TPM1P09493 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC24.48■■□□□ 1.51
TPM1P09493 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
TPM1P09493 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
TPM1P09493 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TPM1P09493 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TPM1P09493 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.48■■□□□ 1.51
TPM1P09493 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.48■■□□□ 1.51
TPM1P09493 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TPM1P09493 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
TPM1P09493 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.47■■□□□ 1.51
TPM1P09493 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.47■■□□□ 1.51
TPM1P09493 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TPM1P09493 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.47■■□□□ 1.51
TPM1P09493 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.47■■□□□ 1.51
TPM1P09493 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TPM1P09493 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TPM1P09493 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TPM1P09493 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.47■■□□□ 1.51
TPM1P09493 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
TPM1P09493 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TPM1P09493 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.46■■□□□ 1.51
TPM1P09493 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TPM1P09493 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC24.46■■□□□ 1.51
TPM1P09493 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.46■■□□□ 1.51
TPM1P09493 AC079630.1-202ENST00000618127 1840 ntBASIC24.46■■□□□ 1.51
TPM1P09493 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TPM1P09493 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TPM1P09493 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TPM1P09493 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TPM1P09493 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TPM1P09493 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.45■■□□□ 1.5
TPM1P09493 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
TPM1P09493 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
TPM1P09493 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TPM1P09493 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TPM1P09493 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
TPM1P09493 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
TPM1P09493 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.44■■□□□ 1.5
TPM1P09493 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC24.44■■□□□ 1.5
TPM1P09493 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 AC129492.7-201ENST00000622992 756 ntBASIC24.44■■□□□ 1.5
TPM1P09493 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TPM1P09493 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 AC019171.1-201ENST00000601251 1056 ntBASIC24.43■■□□□ 1.5
TPM1P09493 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.43■■□□□ 1.5
TPM1P09493 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.43■■□□□ 1.5
TPM1P09493 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
TPM1P09493 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.42■■□□□ 1.5
TPM1P09493 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
TPM1P09493 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 AC139795.1-202ENST00000500444 432 ntBASIC24.42■■□□□ 1.5
TPM1P09493 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.42■■□□□ 1.5
TPM1P09493 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
TPM1P09493 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TPM1P09493 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TPM1P09493 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.41■■□□□ 1.5
TPM1P09493 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TPM1P09493 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
TPM1P09493 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms