Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HOXC4P09017 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HOXC4P09017 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.96■■□□□ 1.11
HOXC4P09017 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.96■■□□□ 1.11
HOXC4P09017 AC079630.1-202ENST00000618127 1840 ntBASIC21.96■■□□□ 1.11
HOXC4P09017 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HOXC4P09017 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HOXC4P09017 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
HOXC4P09017 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HOXC4P09017 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
HOXC4P09017 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HOXC4P09017 IRS3P-201ENST00000223076 1006 ntBASIC21.95■■□□□ 1.1
HOXC4P09017 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.95■■□□□ 1.1
HOXC4P09017 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.95■■□□□ 1.1
HOXC4P09017 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HOXC4P09017 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.95■■□□□ 1.1
HOXC4P09017 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.95■■□□□ 1.1
HOXC4P09017 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
HOXC4P09017 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
HOXC4P09017 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.94■■□□□ 1.1
HOXC4P09017 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HOXC4P09017 ABCB10P4-201ENST00000566803 2184 ntBASIC21.94■■□□□ 1.1
HOXC4P09017 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.94■■□□□ 1.1
HOXC4P09017 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.94■■□□□ 1.1
HOXC4P09017 AC126544.1-201ENST00000580842 1059 ntBASIC21.94■■□□□ 1.1
HOXC4P09017 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HOXC4P09017 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HOXC4P09017 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HOXC4P09017 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.94■■□□□ 1.1
HOXC4P09017 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HOXC4P09017 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HOXC4P09017 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HOXC4P09017 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
HOXC4P09017 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HOXC4P09017 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HOXC4P09017 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HOXC4P09017 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HOXC4P09017 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HOXC4P09017 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
HOXC4P09017 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HOXC4P09017 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.93■■□□□ 1.1
HOXC4P09017 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.93■■□□□ 1.1
HOXC4P09017 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
HOXC4P09017 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
HOXC4P09017 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.92■■□□□ 1.1
HOXC4P09017 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.92■■□□□ 1.1
HOXC4P09017 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HOXC4P09017 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HOXC4P09017 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HOXC4P09017 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
HOXC4P09017 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
HOXC4P09017 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
HOXC4P09017 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HOXC4P09017 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
HOXC4P09017 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HOXC4P09017 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
HOXC4P09017 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HOXC4P09017 AP005435.1-201ENST00000529293 1178 ntBASIC21.91■■□□□ 1.1
HOXC4P09017 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.9■■□□□ 1.1
HOXC4P09017 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HOXC4P09017 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
HOXC4P09017 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HOXC4P09017 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
HOXC4P09017 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HOXC4P09017 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
HOXC4P09017 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
HOXC4P09017 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.9■■□□□ 1.1
HOXC4P09017 RARRES2P6-201ENST00000567333 442 ntBASIC21.9■■□□□ 1.1
HOXC4P09017 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HOXC4P09017 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
HOXC4P09017 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
HOXC4P09017 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.9■■□□□ 1.1
HOXC4P09017 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.9■■□□□ 1.1
HOXC4P09017 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.89■■□□□ 1.1
HOXC4P09017 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.89■■□□□ 1.1
HOXC4P09017 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
HOXC4P09017 AC026271.2-201ENST00000428091 497 ntBASIC21.89■■□□□ 1.09
HOXC4P09017 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
HOXC4P09017 IGHV3-19-201ENST00000521488 291 ntBASIC21.89■■□□□ 1.09
HOXC4P09017 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
HOXC4P09017 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HOXC4P09017 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
HOXC4P09017 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
HOXC4P09017 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HOXC4P09017 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HOXC4P09017 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.88■■□□□ 1.09
HOXC4P09017 AC010525.1-201ENST00000585559 441 ntBASIC21.88■■□□□ 1.09
HOXC4P09017 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HOXC4P09017 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.88■■□□□ 1.09
HOXC4P09017 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
HOXC4P09017 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HOXC4P09017 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.87■■□□□ 1.09
HOXC4P09017 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
HOXC4P09017 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HOXC4P09017 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.87■■□□□ 1.09
HOXC4P09017 AL353803.4-201ENST00000565882 1934 ntBASIC21.87■■□□□ 1.09
HOXC4P09017 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.87■■□□□ 1.09
HOXC4P09017 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HOXC4P09017 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.87■■□□□ 1.09
HOXC4P09017 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms