Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.94■□□□□ 0.94
CLPTM1O96005 ESRRAP2-201ENST00000418437 1549 ntBASIC20.94■□□□□ 0.94
CLPTM1O96005 AC009831.1-201ENST00000580420 1582 ntBASIC20.94■□□□□ 0.94
CLPTM1O96005 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.94■□□□□ 0.94
CLPTM1O96005 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.94■□□□□ 0.94
CLPTM1O96005 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 AC026202.3-201ENST00000600805 1127 ntBASIC20.94■□□□□ 0.94
CLPTM1O96005 AC133552.2-201ENST00000619106 1032 ntBASIC20.94■□□□□ 0.94
CLPTM1O96005 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 C11orf96-202ENST00000528572 1834 ntBASIC20.94■□□□□ 0.94
CLPTM1O96005 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CLPTM1O96005 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLPTM1O96005 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CLPTM1O96005 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CLPTM1O96005 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
CLPTM1O96005 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.93■□□□□ 0.94
CLPTM1O96005 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CLPTM1O96005 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CLPTM1O96005 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.93■□□□□ 0.94
CLPTM1O96005 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLPTM1O96005 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CLPTM1O96005 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.92■□□□□ 0.94
CLPTM1O96005 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CLPTM1O96005 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.92■□□□□ 0.94
CLPTM1O96005 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CLPTM1O96005 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CLPTM1O96005 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLPTM1O96005 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CLPTM1O96005 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLPTM1O96005 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLPTM1O96005 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLPTM1O96005 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLPTM1O96005 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CLPTM1O96005 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.91■□□□□ 0.94
CLPTM1O96005 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.91■□□□□ 0.94
CLPTM1O96005 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.91■□□□□ 0.94
CLPTM1O96005 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CLPTM1O96005 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLPTM1O96005 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.9■□□□□ 0.94
CLPTM1O96005 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.9■□□□□ 0.94
CLPTM1O96005 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLPTM1O96005 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLPTM1O96005 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.9■□□□□ 0.94
CLPTM1O96005 AC026310.3-201ENST00000625186 2373 ntBASIC20.9■□□□□ 0.94
CLPTM1O96005 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CLPTM1O96005 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLPTM1O96005 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLPTM1O96005 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLPTM1O96005 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLPTM1O96005 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CLPTM1O96005 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.89■□□□□ 0.94
CLPTM1O96005 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CLPTM1O96005 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.89■□□□□ 0.93
CLPTM1O96005 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 AL592293.1-201ENST00000502889 1188 ntBASIC20.89■□□□□ 0.93
CLPTM1O96005 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.89■□□□□ 0.93
CLPTM1O96005 RAP2CP1-202ENST00000605179 643 ntBASIC20.89■□□□□ 0.93
CLPTM1O96005 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CLPTM1O96005 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CLPTM1O96005 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLPTM1O96005 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.88■□□□□ 0.93
CLPTM1O96005 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.88■□□□□ 0.93
CLPTM1O96005 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CLPTM1O96005 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLPTM1O96005 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms