Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
NPHP4O75161 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
NPHP4O75161 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC32.05■■■□□ 2.72
NPHP4O75161 AL161729.1-201ENST00000604104 1402 ntBASIC32.05■■■□□ 2.72
NPHP4O75161 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC32.05■■■□□ 2.72
NPHP4O75161 AC093827.2-201ENST00000512654 315 ntBASIC32.05■■■□□ 2.72
NPHP4O75161 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC32.05■■■□□ 2.72
NPHP4O75161 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
NPHP4O75161 AL050303.2-201ENST00000619798 666 ntBASIC32.05■■■□□ 2.72
NPHP4O75161 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
NPHP4O75161 SLC6A10P-202ENST00000431994 2058 ntBASIC32.05■■■□□ 2.72
NPHP4O75161 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC32.05■■■□□ 2.72
NPHP4O75161 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.05■■■□□ 2.72
NPHP4O75161 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
NPHP4O75161 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC32.04■■■□□ 2.72
NPHP4O75161 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
NPHP4O75161 KRT19P1-201ENST00000405746 1186 ntBASIC32.04■■■□□ 2.72
NPHP4O75161 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
NPHP4O75161 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
NPHP4O75161 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC32.04■■■□□ 2.72
NPHP4O75161 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC32.04■■■□□ 2.72
NPHP4O75161 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC32.04■■■□□ 2.72
NPHP4O75161 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
NPHP4O75161 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC32.03■■■□□ 2.72
NPHP4O75161 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP4O75161 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP4O75161 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC32.03■■■□□ 2.72
NPHP4O75161 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC32.03■■■□□ 2.72
NPHP4O75161 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC32.03■■■□□ 2.72
NPHP4O75161 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP4O75161 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP4O75161 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP4O75161 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
NPHP4O75161 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP4O75161 GUSBP6-202ENST00000438529 1198 ntBASIC32.02■■■□□ 2.72
NPHP4O75161 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC32.02■■■□□ 2.72
NPHP4O75161 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP4O75161 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP4O75161 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
NPHP4O75161 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
NPHP4O75161 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.72
NPHP4O75161 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC32■■■□□ 2.71
NPHP4O75161 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NPHP4O75161 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC32■■■□□ 2.71
NPHP4O75161 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC32■■■□□ 2.71
NPHP4O75161 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC32■■■□□ 2.71
NPHP4O75161 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC32■■■□□ 2.71
NPHP4O75161 DET1-205ENST00000558413 583 ntTSL 4 BASIC32■■■□□ 2.71
NPHP4O75161 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC32■■■□□ 2.71
NPHP4O75161 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
NPHP4O75161 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP4O75161 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
NPHP4O75161 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP4O75161 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP4O75161 KRT18P11-201ENST00000435214 1283 ntBASIC31.99■■■□□ 2.71
NPHP4O75161 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NPHP4O75161 ALDH1A3-203ENST00000557963 1670 ntBASIC31.98■■■□□ 2.71
NPHP4O75161 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP4O75161 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.98■■■□□ 2.71
NPHP4O75161 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP4O75161 TSPY6P-201ENST00000448518 926 ntBASIC31.98■■■□□ 2.71
NPHP4O75161 SPI1-203ENST00000533030 661 ntTSL 2 BASIC31.98■■■□□ 2.71
NPHP4O75161 MDK-213ENST00000617138 635 ntTSL 2 BASIC31.98■■■□□ 2.71
NPHP4O75161 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP4O75161 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP4O75161 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC31.97■■■□□ 2.71
NPHP4O75161 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP4O75161 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP4O75161 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC31.97■■■□□ 2.71
NPHP4O75161 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC31.97■■■□□ 2.71
NPHP4O75161 KLF13-207ENST00000560473 489 ntTSL 3 BASIC31.97■■■□□ 2.71
NPHP4O75161 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC31.97■■■□□ 2.71
NPHP4O75161 AL121832.2-201ENST00000610979 668 ntBASIC31.97■■■□□ 2.71
NPHP4O75161 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP4O75161 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP4O75161 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
NPHP4O75161 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC31.96■■■□□ 2.71
NPHP4O75161 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC31.96■■■□□ 2.71
NPHP4O75161 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC31.96■■■□□ 2.71
NPHP4O75161 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP4O75161 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP4O75161 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC31.95■■■□□ 2.71
NPHP4O75161 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
NPHP4O75161 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.95■■■□□ 2.71
NPHP4O75161 SLC7A5P2-201ENST00000553010 536 ntBASIC31.95■■■□□ 2.71
NPHP4O75161 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC31.95■■■□□ 2.71
NPHP4O75161 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC31.95■■■□□ 2.71
NPHP4O75161 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
NPHP4O75161 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.95■■■□□ 2.71
NPHP4O75161 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
NPHP4O75161 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.95■■■□□ 2.7
NPHP4O75161 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
NPHP4O75161 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP4O75161 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC31.94■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms