Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
MSH4O15457 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.2■■□□□ 1.63
MSH4O15457 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
MSH4O15457 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
MSH4O15457 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
MSH4O15457 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
MSH4O15457 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.2■■□□□ 1.62
MSH4O15457 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.2■■□□□ 1.62
MSH4O15457 MIR4767-201ENST00000582827 78 ntBASIC25.2■■□□□ 1.62
MSH4O15457 AL031432.3-201ENST00000607698 485 ntBASIC25.2■■□□□ 1.62
MSH4O15457 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
MSH4O15457 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
MSH4O15457 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.2■■□□□ 1.62
MSH4O15457 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.2■■□□□ 1.62
MSH4O15457 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.19■■□□□ 1.62
MSH4O15457 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH4O15457 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
MSH4O15457 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.19■■□□□ 1.62
MSH4O15457 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH4O15457 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
MSH4O15457 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH4O15457 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH4O15457 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
MSH4O15457 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 AC005837.3-201ENST00000612163 286 ntBASIC25.18■■□□□ 1.62
MSH4O15457 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.18■■□□□ 1.62
MSH4O15457 AC136469.2-201ENST00000623944 1028 ntBASIC25.18■■□□□ 1.62
MSH4O15457 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH4O15457 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
MSH4O15457 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH4O15457 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.17■■□□□ 1.62
MSH4O15457 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
MSH4O15457 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
MSH4O15457 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH4O15457 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH4O15457 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH4O15457 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH4O15457 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.17■■□□□ 1.62
MSH4O15457 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH4O15457 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
MSH4O15457 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.16■■□□□ 1.62
MSH4O15457 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH4O15457 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC25.16■■□□□ 1.62
MSH4O15457 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH4O15457 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MSH4O15457 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH4O15457 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.15■■□□□ 1.62
MSH4O15457 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH4O15457 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
MSH4O15457 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.15■■□□□ 1.62
MSH4O15457 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.15■■□□□ 1.62
MSH4O15457 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.15■■□□□ 1.62
MSH4O15457 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH4O15457 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
MSH4O15457 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MSH4O15457 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
MSH4O15457 AC133637.1-201ENST00000624115 1537 ntBASIC25.14■■□□□ 1.62
MSH4O15457 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH4O15457 EDA-201ENST00000338901 1233 ntBASIC25.14■■□□□ 1.62
MSH4O15457 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
MSH4O15457 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
MSH4O15457 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.14■■□□□ 1.62
MSH4O15457 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.62
MSH4O15457 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
MSH4O15457 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
MSH4O15457 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 SUDS3P1-201ENST00000505831 966 ntBASIC25.13■■□□□ 1.61
MSH4O15457 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.13■■□□□ 1.61
MSH4O15457 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.13■■□□□ 1.61
MSH4O15457 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH4O15457 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.12■■□□□ 1.61
MSH4O15457 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.12■■□□□ 1.61
MSH4O15457 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH4O15457 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.12■■□□□ 1.61
MSH4O15457 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
MSH4O15457 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms