Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
BDNFP23560 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
BDNFP23560 AC041040.1-201ENST00000425197 460 ntBASIC14.51□□□□□ -0.09
BDNFP23560 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC14.51□□□□□ -0.09
BDNFP23560 AC005077.3-201ENST00000449614 213 ntBASIC14.51□□□□□ -0.09
BDNFP23560 AC079250.1-201ENST00000456046 531 ntBASIC14.51□□□□□ -0.09
BDNFP23560 AC093909.3-201ENST00000504783 336 ntBASIC14.51□□□□□ -0.09
BDNFP23560 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC14.51□□□□□ -0.09
BDNFP23560 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.51□□□□□ -0.09
BDNFP23560 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC14.51□□□□□ -0.09
BDNFP23560 NAMA-206ENST00000605377 509 ntTSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
BDNFP23560 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
BDNFP23560 MARK2P9-201ENST00000430958 1727 ntBASIC14.51□□□□□ -0.09
BDNFP23560 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC14.51□□□□□ -0.09
BDNFP23560 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
BDNFP23560 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BDNFP23560 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.5□□□□□ -0.09
BDNFP23560 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
BDNFP23560 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
BDNFP23560 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.5□□□□□ -0.09
BDNFP23560 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 AC130686.1-201ENST00000622936 2466 ntBASIC14.5□□□□□ -0.09
BDNFP23560 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
BDNFP23560 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
BDNFP23560 AP000354.1-201ENST00000396982 456 ntBASIC14.5□□□□□ -0.09
BDNFP23560 AL627389.1-201ENST00000413508 1182 ntBASIC14.5□□□□□ -0.09
BDNFP23560 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 HNRNPA1P2-207ENST00000432375 960 ntBASIC14.5□□□□□ -0.09
BDNFP23560 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC14.5□□□□□ -0.09
BDNFP23560 RN7SL818P-201ENST00000485099 259 ntBASIC14.5□□□□□ -0.09
BDNFP23560 PGAM1P12-201ENST00000505622 748 ntBASIC14.5□□□□□ -0.09
BDNFP23560 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC14.5□□□□□ -0.09
BDNFP23560 RN7SL725P-201ENST00000606439 259 ntBASIC14.5□□□□□ -0.09
BDNFP23560 AC006158.1-201ENST00000610661 249 ntBASIC14.5□□□□□ -0.09
BDNFP23560 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.5□□□□□ -0.09
BDNFP23560 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
BDNFP23560 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.5□□□□□ -0.09
BDNFP23560 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.5□□□□□ -0.09
BDNFP23560 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
BDNFP23560 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BDNFP23560 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.5□□□□□ -0.09
BDNFP23560 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC14.5□□□□□ -0.09
BDNFP23560 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.5□□□□□ -0.09
BDNFP23560 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 AC092115.1-201ENST00000566277 1402 ntBASIC14.49□□□□□ -0.09
BDNFP23560 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 MANEA-AS1-201ENST00000564541 2268 ntBASIC14.49□□□□□ -0.09
BDNFP23560 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
BDNFP23560 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC14.49□□□□□ -0.09
BDNFP23560 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.49□□□□□ -0.09
BDNFP23560 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC14.49□□□□□ -0.09
BDNFP23560 AC097065.1-201ENST00000425737 517 ntBASIC14.49□□□□□ -0.09
BDNFP23560 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.49□□□□□ -0.09
BDNFP23560 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.49□□□□□ -0.09
BDNFP23560 AC026410.1-201ENST00000507366 1101 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms