Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
ZIC3O60481 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.35□□□□□ -0.43
ZIC3O60481 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.35□□□□□ -0.43
ZIC3O60481 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.35□□□□□ -0.43
ZIC3O60481 GUCY2EP-203ENST00000531117 1918 ntBASIC12.35□□□□□ -0.43
ZIC3O60481 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC12.35□□□□□ -0.43
ZIC3O60481 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.35□□□□□ -0.43
ZIC3O60481 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
ZIC3O60481 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
ZIC3O60481 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.34□□□□□ -0.43
ZIC3O60481 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.34□□□□□ -0.43
ZIC3O60481 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 AL445250.1-201ENST00000641671 2259 ntBASIC12.34□□□□□ -0.43
ZIC3O60481 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
ZIC3O60481 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
ZIC3O60481 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
ZIC3O60481 AP000354.1-201ENST00000396982 456 ntBASIC12.34□□□□□ -0.43
ZIC3O60481 GALP-202ENST00000440823 889 ntTSL 5 BASIC12.34□□□□□ -0.43
ZIC3O60481 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC12.34□□□□□ -0.43
ZIC3O60481 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC12.34□□□□□ -0.43
ZIC3O60481 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC12.34□□□□□ -0.43
ZIC3O60481 AC008026.2-201ENST00000495438 348 ntBASIC12.34□□□□□ -0.43
ZIC3O60481 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 MIR4750-201ENST00000584564 56 ntBASIC12.34□□□□□ -0.43
ZIC3O60481 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC12.34□□□□□ -0.43
ZIC3O60481 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC12.34□□□□□ -0.43
ZIC3O60481 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
ZIC3O60481 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.34□□□□□ -0.43
ZIC3O60481 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 AC105206.1-202ENST00000314927 2368 ntBASIC12.34□□□□□ -0.43
ZIC3O60481 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
ZIC3O60481 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
ZIC3O60481 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
ZIC3O60481 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.33□□□□□ -0.43
ZIC3O60481 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
ZIC3O60481 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.43
ZIC3O60481 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.33□□□□□ -0.43
ZIC3O60481 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
ZIC3O60481 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.33□□□□□ -0.43
ZIC3O60481 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.33□□□□□ -0.44
ZIC3O60481 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC12.33□□□□□ -0.44
ZIC3O60481 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.33□□□□□ -0.44
ZIC3O60481 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.33□□□□□ -0.44
ZIC3O60481 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
ZIC3O60481 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
ZIC3O60481 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
ZIC3O60481 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
ZIC3O60481 EGLN3-205ENST00000547327 2849 ntBASIC12.33□□□□□ -0.44
ZIC3O60481 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.33□□□□□ -0.44
ZIC3O60481 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC12.33□□□□□ -0.44
ZIC3O60481 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
ZIC3O60481 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
ZIC3O60481 STK16-203ENST00000409516 895 ntTSL 2 BASIC12.33□□□□□ -0.44
ZIC3O60481 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
ZIC3O60481 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms