Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ACTBP7-201ENST00000418351 1124 ntBASIC14□□□□□ -0.17
SHROOM3Q8TF72 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 TRMT112P3-201ENST00000580149 358 ntBASIC14□□□□□ -0.17
SHROOM3Q8TF72 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AC026120.2-201ENST00000617239 309 ntBASIC14□□□□□ -0.17
SHROOM3Q8TF72 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AL355102.3-201ENST00000554299 1678 ntBASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 PSMD4P1-201ENST00000433951 1109 ntBASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 RN7SKP155-201ENST00000516031 288 ntBASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AC012073.1-201ENST00000606114 1108 ntBASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AC087392.5-201ENST00000612517 489 ntBASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AL513497.1-201ENST00000624273 2083 ntBASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC13.99□□□□□ -0.17
SHROOM3Q8TF72 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 HNRNPLP1-201ENST00000421896 1501 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PRSS3P1-201ENST00000503996 742 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms