Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 POM121L10P-201ENST00000436994 1285 ntBASIC12.22□□□□□ -0.45
SOX2P48431 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
SOX2P48431 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.22□□□□□ -0.45
SOX2P48431 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.22□□□□□ -0.45
SOX2P48431 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.22□□□□□ -0.45
SOX2P48431 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC12.22□□□□□ -0.45
SOX2P48431 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC12.22□□□□□ -0.45
SOX2P48431 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 PXK-210ENST00000479241 2817 ntTSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC12.22□□□□□ -0.45
SOX2P48431 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
SOX2P48431 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
SOX2P48431 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SOX2P48431 AMT-221ENST00000538581 2038 ntTSL 2 BASIC12.21□□□□□ -0.45
SOX2P48431 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC12.21□□□□□ -0.45
SOX2P48431 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC12.21□□□□□ -0.45
SOX2P48431 LINC01815-202ENST00000641468 1409 ntBASIC12.21□□□□□ -0.45
SOX2P48431 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC12.21□□□□□ -0.45
SOX2P48431 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.21□□□□□ -0.45
SOX2P48431 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC12.21□□□□□ -0.45
SOX2P48431 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC12.21□□□□□ -0.45
SOX2P48431 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.21□□□□□ -0.45
SOX2P48431 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
SOX2P48431 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC12.21□□□□□ -0.45
SOX2P48431 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC12.21□□□□□ -0.45
SOX2P48431 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC12.21□□□□□ -0.45
SOX2P48431 AC026954.1-201ENST00000429771 1293 ntBASIC12.21□□□□□ -0.45
SOX2P48431 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.21□□□□□ -0.45
SOX2P48431 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC12.21□□□□□ -0.45
SOX2P48431 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC12.21□□□□□ -0.45
SOX2P48431 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.21□□□□□ -0.45
SOX2P48431 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
SOX2P48431 AC008805.1-201ENST00000590892 364 ntBASIC12.21□□□□□ -0.45
SOX2P48431 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.21□□□□□ -0.45
SOX2P48431 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SOX2P48431 AL022323.5-201ENST00000624101 2059 ntBASIC12.21□□□□□ -0.45
SOX2P48431 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC12.21□□□□□ -0.46
SOX2P48431 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.21□□□□□ -0.46
SOX2P48431 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC12.21□□□□□ -0.46
SOX2P48431 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SOX2P48431 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.21□□□□□ -0.46
SOX2P48431 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC12.21□□□□□ -0.46
SOX2P48431 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
SOX2P48431 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC12.2□□□□□ -0.46
SOX2P48431 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
SOX2P48431 DDAH1-201ENST00000284031 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC12.2□□□□□ -0.46
SOX2P48431 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms