Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 ERG-211ENST00000453032 1595 ntTSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 AC026410.1-201ENST00000507366 1101 ntBASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 MIR4649-201ENST00000582839 64 ntBASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC14.02□□□□□ -0.17
SHROOM3Q8TF72 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AC063926.3-201ENST00000624734 5658 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 CICP8-201ENST00000455800 2813 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AC091807.1-201ENST00000418838 1544 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AL031719.1-201ENST00000623365 2587 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AC040160.2-201ENST00000623816 1675 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AC005252.3-201ENST00000623855 2258 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 RN7SL767P-201ENST00000493013 295 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 MIR5196-201ENST00000578146 115 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AC073862.5-201ENST00000624129 2027 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 AP003969.2-201ENST00000623739 2275 ntBASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHROOM3Q8TF72 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14□□□□□ -0.17
SHROOM3Q8TF72 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AL359091.4-201ENST00000610052 409 ntBASIC14□□□□□ -0.17
SHROOM3Q8TF72 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC14□□□□□ -0.17
SHROOM3Q8TF72 AC027612.1-201ENST00000445234 2395 ntBASIC14□□□□□ -0.17
SHROOM3Q8TF72 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC14□□□□□ -0.17
SHROOM3Q8TF72 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms