Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 AC068418.2-201ENST00000577309 3703 ntBASIC21.09■□□□□ 0.97
VPS8Q8N3P4 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 AC004522.1-201ENST00000419978 654 ntBASIC21.09■□□□□ 0.97
VPS8Q8N3P4 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC21.09■□□□□ 0.97
VPS8Q8N3P4 LINC00643-207ENST00000637212 734 ntBASIC21.09■□□□□ 0.97
VPS8Q8N3P4 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS8Q8N3P4 ZDHHC8P1-202ENST00000418264 1403 ntBASIC21.09■□□□□ 0.97
VPS8Q8N3P4 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 AC002350.2-201ENST00000623894 1828 ntBASIC21.08■□□□□ 0.97
VPS8Q8N3P4 C1R-202ENST00000536053 2347 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 TCAF1P1-201ENST00000414990 2232 ntBASIC21.08■□□□□ 0.97
VPS8Q8N3P4 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 AL929302.1-201ENST00000426556 871 ntBASIC21.08■□□□□ 0.97
VPS8Q8N3P4 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 AC010234.1-201ENST00000494599 870 ntBASIC21.08■□□□□ 0.97
VPS8Q8N3P4 RBM4-207ENST00000506523 654 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS8Q8N3P4 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS8Q8N3P4 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC21.08■□□□□ 0.96
VPS8Q8N3P4 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS8Q8N3P4 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS8Q8N3P4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS8Q8N3P4 DTX2P1-201ENST00000425797 1633 ntBASIC21.07■□□□□ 0.96
VPS8Q8N3P4 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 TUBB8P5-201ENST00000445286 1351 ntBASIC21.07■□□□□ 0.96
VPS8Q8N3P4 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 GDNF-207ENST00000515058 764 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS8Q8N3P4 DDX12P-201ENST00000432996 2947 ntBASIC21.06■□□□□ 0.96
VPS8Q8N3P4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 HSD3BP1-201ENST00000286193 1111 ntBASIC21.06■□□□□ 0.96
VPS8Q8N3P4 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 MRPL55-207ENST00000366733 834 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
VPS8Q8N3P4 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms