Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 AC093462.1-201ENST00000621167 1683 ntBASIC13□□□□□ -0.33
AMBRA1Q9C0C7 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 ATP6V0CP2-201ENST00000469409 207 ntBASIC13□□□□□ -0.33
AMBRA1Q9C0C7 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 AC108725.1-201ENST00000495472 409 ntBASIC13□□□□□ -0.33
AMBRA1Q9C0C7 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 AC091271.1-201ENST00000611877 1162 ntBASIC13□□□□□ -0.33
AMBRA1Q9C0C7 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 FAM90A11P-201ENST00000518378 2218 ntBASIC13□□□□□ -0.33
AMBRA1Q9C0C7 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
AMBRA1Q9C0C7 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AP001972.5-201ENST00000624624 2338 ntBASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 SCARNA21-201ENST00000517026 139 ntBASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 PPA1-206ENST00000625364 644 ntTSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 DDX12P-201ENST00000432996 2947 ntBASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
AMBRA1Q9C0C7 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms